Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 0.0e+00 1264.6 849 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.5e-103 381.7 833 43.8
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 3.2e-103 380.6 863 45.1
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 9.1e-90 335.9 826 39.1
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 7.5e-84 316.2 562 41.8
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 4.9e-83 313.5 782 40.0
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 1.9e-79 301.6 861 31.9
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 2.6e-76 291.2 861 32.8
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 1.7e-75 288.5 836 32.2
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 3.7e-75 287.3 842 29.0
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 1.1e-74 285.8 587 38.3
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.1e-74 285.8 503 40.8
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 1.4e-74 285.4 881 34.2
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 1.8e-74 285.0 862 31.2
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 3.2e-74 284.3 829 32.8
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 3.2e-74 284.3 859 30.5
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 4.1e-74 283.9 846 29.6
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 4.1e-74 283.9 846 29.6
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.7e-72 278.5 589 34.1
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.7e-72 278.5 578 38.2
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 3.9e-72 277.3 306 49.3
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 6.6e-72 276.6 579 37.5
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 6.6e-72 276.6 871 30.9
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 1.1e-71 275.8 587 36.8
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.5e-71 275.4 577 38.0
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 1.5e-71 275.4 782 35.3
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 1.9e-71 275.0 586 36.9
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 4.3e-71 273.9 562 34.9
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 5.6e-71 273.5 562 34.5
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 7.3e-71 273.1 581 34.1
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 9.5e-71 272.7 568 38.6
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 9.5e-71 272.7 578 37.0
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.2e-70 272.3 852 33.0
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.6e-70 271.9 601 35.9
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 2.1e-70 271.6 574 36.2
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 1.4e-69 268.9 858 29.3
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 1.4e-69 268.9 575 34.1
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 1.8e-69 268.5 856 31.0
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 3.1e-69 267.7 837 29.6
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 6.8e-69 266.5 582 37.1
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 6.8e-69 266.5 879 32.3
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 2.6e-68 264.6 580 38.1
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 2.6e-68 264.6 581 36.3
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 4.4e-68 263.8 874 30.9
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 7.5e-68 263.1 578 33.9
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 1.3e-67 262.3 562 37.9
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.1e-66 259.2 844 30.7
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 1.9e-66 258.5 868 29.8
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 1.9e-66 258.5 581 37.7
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 4.1e-66 257.3 818 28.4
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 1.2e-65 255.8 886 31.0
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.6e-65 255.4 855 30.1
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 2.7e-65 254.6 868 30.5
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 3.5e-65 254.2 809 31.9
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 6.0e-65 253.4 830 35.7
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 2.3e-64 251.5 868 27.6
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 5.0e-64 250.4 870 30.0
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 8.6e-64 249.6 844 30.2
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 1.6e-62 245.4 837 31.8
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 2.1e-62 245.0 843 33.6
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 2.1e-62 245.0 882 27.3
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 2.8e-62 244.6 843 30.8
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 4.7e-62 243.8 838 33.1
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 6.2e-62 243.4 305 43.3
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 1.4e-61 242.3 880 31.4
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.8e-61 241.9 779 33.0
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.8e-61 241.9 585 35.4
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 4.0e-61 240.7 569 32.2
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 8.9e-61 239.6 311 43.4
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 5.8e-60 236.9 870 30.7
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 1.3e-59 235.7 603 32.8
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.7e-59 235.3 565 34.3
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 6.4e-59 233.4 858 31.1
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.4e-58 232.3 612 34.3
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 1.9e-58 231.9 713 35.2
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.9e-58 231.9 812 29.8
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 2.4e-58 231.5 579 33.7
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 3.2e-58 231.1 568 32.9
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 7.1e-58 229.9 579 35.4
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 2.1e-57 228.4 569 35.0
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.7e-57 228.0 831 29.1
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 3.5e-57 227.6 586 35.7
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 3.5e-57 227.6 883 26.7
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 1.3e-56 225.7 502 32.5
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 2.3e-56 224.9 587 35.9
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 3.9e-56 224.2 821 29.2
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 3.9e-56 224.2 832 32.8
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 5.1e-56 223.8 830 27.7
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 6.6e-56 223.4 783 34.0
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 1.1e-55 222.6 569 35.3
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 2.5e-55 221.5 582 30.6
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 5.6e-55 220.3 827 28.2
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 9.5e-55 219.5 567 34.4
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.1e-54 218.4 573 34.9
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.8e-54 218.0 491 37.7
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 2.8e-54 218.0 550 34.5
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.4e-53 215.7 299 40.8
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 1.8e-53 215.3 306 40.2
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 4.0e-53 214.2 567 31.6
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 5.2e-53 213.8 567 33.2
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.5e-52 212.2 193 57.0
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 3.7e-51 207.6 861 32.1
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 1.4e-50 205.7 567 33.9
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 3.2e-50 204.5 561 32.3
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 4.1e-50 204.1 569 29.9
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 9.2e-50 203.0 859 29.9
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 4.6e-49 200.7 576 29.2
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 1.3e-48 199.1 590 33.6
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 6.2e-46 190.3 700 31.6
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 2.9e-43 181.4 579 29.7
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 2.1e-41 175.3 202 45.0
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 2.3e-40 171.8 733 26.3
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 2.8e-38 164.9 212 43.9
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.8e-38 164.1 486 34.4
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 1.7e-35 155.6 190 43.2
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 1.1e-34 152.9 156 47.4
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 1.3e-32 146.0 194 39.2
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.0e-20 105.5 357 26.1
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 2.9e-19 101.7 444 29.5
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 4.2e-18 97.8 214 36.0
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 2.1e-17 95.5 99 45.5
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 6.7e-16 90.5 109 44.0
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 2.2e-11 75.5 80 41.2
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 5.0e-11 74.3 73 52.1
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.4e-10 72.8 72 51.4
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 1.9e-10 72.4 82 47.6
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 2.5e-10 72.0 80 40.0
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 3.2e-10 71.6 143 32.2
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.2e-09 69.7 61 57.4
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.7e-09 68.6 52 53.8
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 1.6e-06 59.3 64 48.4


User provided reference genes

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