Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 7.2e-275 949.9 460 100.0
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 3.2e-174 615.5 444 65.3
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 5.5e-174 614.8 429 65.5
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 3.6e-173 612.1 459 63.2
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.4e-172 610.1 427 65.8
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.5e-171 606.7 442 65.4
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.0e-171 606.3 428 66.6
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 2.6e-171 605.9 447 64.4
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 3.3e-171 605.5 449 65.5
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 5.7e-171 604.7 443 63.7
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 2.2e-170 602.8 430 64.9
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 2.8e-170 602.4 430 65.3
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 8.2e-170 600.9 459 63.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.1e-169 600.5 449 63.3
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.1e-169 600.5 449 63.3
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.1e-169 600.5 453 62.0
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.1e-169 600.5 447 63.5
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.4e-169 600.1 427 65.1
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.4e-169 599.4 447 64.0
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 4.1e-169 598.6 434 65.0
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 4.1e-169 598.6 452 63.3
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 7.0e-169 597.8 446 63.0
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.5e-168 595.5 450 62.0
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.5e-168 595.1 435 63.2
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 4.5e-168 595.1 429 64.8
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 7.7e-168 594.3 462 61.3
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.0e-167 594.0 419 65.2
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.3e-167 593.6 437 63.8
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.7e-167 593.2 428 64.7
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.7e-167 593.2 435 63.0
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 3.8e-167 592.0 442 63.1
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 5.0e-167 591.7 435 62.8
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.1e-166 590.5 424 65.1
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 1.1e-166 590.5 432 63.7
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.5e-166 590.1 455 60.4
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.9e-166 589.7 436 63.5
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 2.5e-166 589.3 447 62.4
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 3.2e-166 589.0 456 62.5
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 4.2e-166 588.6 430 64.4
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 9.4e-166 587.4 436 63.3
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 9.4e-166 587.4 436 62.8
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.1e-165 586.3 429 63.6
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 2.7e-165 585.9 432 63.7
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 3.6e-165 585.5 457 61.5
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 6.1e-165 584.7 442 61.8
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.4e-164 583.6 436 63.3
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 4.0e-164 582.0 463 60.9
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 5.2e-164 581.6 436 62.6
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 6.8e-164 581.3 431 62.9
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 3.4e-163 578.9 450 60.4
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.7e-162 576.6 427 62.5
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.2e-162 576.2 431 62.2
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.7e-162 575.5 427 64.2
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 4.8e-162 575.1 445 60.9
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.4e-161 573.5 434 62.7
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.8e-161 573.2 463 59.0
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.4e-161 572.8 469 58.6
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 4.1e-161 572.0 462 59.7
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.1e-161 572.0 451 59.9
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.6e-160 570.1 450 60.7
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 7.7e-160 567.8 455 59.3
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.0e-159 567.4 464 58.8
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.7e-159 566.6 454 60.8
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.2e-159 566.2 450 59.6
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.9e-159 565.8 430 62.8
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 3.8e-159 565.5 441 59.4
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 5.0e-159 565.1 451 60.8
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 8.5e-159 564.3 451 59.6
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.9e-158 563.1 452 59.5
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 3.2e-158 562.4 454 57.9
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 3.2e-158 562.4 442 59.5
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 4.2e-158 562.0 423 62.9
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 4.2e-158 562.0 436 59.9
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 9.5e-158 560.8 436 59.4
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 9.5e-158 560.8 452 59.7
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.2e-157 560.5 440 60.0
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 2.7e-157 559.3 441 61.2
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 6.1e-157 558.1 429 62.7
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 8.0e-157 557.8 435 62.1
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.0e-156 557.4 464 56.9
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.8e-156 556.6 452 58.2
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 3.0e-156 555.8 458 57.9
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 4.0e-156 555.4 438 60.7
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 6.8e-156 554.7 434 59.7
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 8.8e-156 554.3 431 59.6
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 8.8e-156 554.3 444 59.2
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 2.0e-155 553.1 438 60.3
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 3.4e-155 552.4 444 59.0
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.7e-154 550.1 433 59.4
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.7e-154 550.1 433 59.4
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 6.3e-154 548.1 440 60.0
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 4.1e-153 545.4 457 56.9
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 4.1e-153 545.4 441 60.3
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.3e-151 540.4 449 59.0
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 2.9e-151 539.3 364 67.3
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 1.5e-150 537.0 456 59.0
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.5e-150 537.0 412 62.4
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.5e-150 537.0 449 58.1
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.8e-148 530.0 403 61.3
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 4.0e-148 528.9 486 54.3
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.2e-148 528.5 447 59.3
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.5e-147 526.9 456 56.8
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 3.7e-146 522.3 380 62.9
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 8.3e-146 521.2 477 54.3
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.1e-145 520.8 358 65.9
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.0e-144 516.5 406 60.3
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 7.3e-142 508.1 355 65.6
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 4.0e-140 502.3 398 59.5
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 4.4e-139 498.8 411 57.9
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 5.4e-137 491.9 354 64.4
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 9.2e-137 491.1 472 51.5
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 8.9e-132 474.6 384 60.9
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 9.2e-129 464.5 466 52.4
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 3.5e-128 462.6 542 45.4
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.6e-125 452.6 347 62.2
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 4.7e-125 452.2 347 62.2
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.6e-123 444.9 325 61.8
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 7.6e-123 444.9 310 65.5
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 3.4e-115 419.5 433 50.1
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 7.6e-115 418.3 409 53.1
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 2.7e-104 383.3 293 64.2
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 3.9e-103 379.4 407 47.4
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.1e-101 373.6 461 46.0
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 4.8e-101 372.5 293 62.5
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.9e-95 352.8 261 61.7
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 5.6e-94 349.0 416 42.1
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.3e-93 347.8 439 42.4
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.1e-92 343.2 422 46.2
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.8e-90 336.3 449 45.0
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.3e-87 327.8 330 49.7
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.8e-76 290.8 203 64.0
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 1.4e-65 254.6 282 49.3
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.4e-60 238.0 220 53.6
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 3.1e-60 236.9 175 64.0
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.2e-50 204.1 193 52.3
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.5e-49 200.7 119 72.3
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 4.0e-47 193.4 196 51.0
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 4.7e-40 169.9 218 47.2
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.8e-34 150.2 155 48.4
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 4.3e-33 146.7 203 41.9
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.3e-31 141.0 232 36.6
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 5.2e-31 139.8 94 70.2
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 9.2e-28 129.0 112 56.2
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.2e-27 128.6 190 39.5
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.7e-27 127.5 188 38.8
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 9.5e-25 119.0 86 62.8
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 7.0e-20 102.8 62 74.2
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 6.6e-18 96.3 132 40.2
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.2e-16 89.7 85 50.6
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 8.9e-15 85.9 70 60.0
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.5e-14 82.8 188 29.3
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 7.8e-11 72.8 72 45.8
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.6e-06 57.8 33 72.7
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.8e-06 56.6 79 41.8


User provided reference genes

Program Settings