Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 1.3e-274 949.1 468 100.0
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.3e-154 550.4 413 65.1
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.9e-143 512.3 314 76.1
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.1e-140 504.2 375 63.5
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.0e-138 497.7 394 63.5
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 2.2e-138 496.5 365 64.9
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.7e-133 479.2 341 66.0
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 3.4e-131 472.6 349 64.5
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 5.9e-131 471.9 339 65.5
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 1.3e-130 470.7 338 65.7
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 1.3e-130 470.7 360 60.6
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.2e-130 469.9 349 64.2
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 2.9e-130 469.5 339 64.9
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 2.9e-130 469.5 367 62.1
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 3.8e-130 469.2 331 66.2
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 5.0e-130 468.8 354 63.6
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 5.0e-130 468.8 355 63.4
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 8.5e-130 468.0 356 63.5
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 8.5e-130 468.0 310 68.1
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 1.9e-129 466.8 306 69.3
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 2.5e-129 466.5 338 65.4
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.5e-129 466.5 341 63.6
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 2.5e-129 466.5 367 61.0
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.5e-129 466.5 342 64.6
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 4.2e-129 465.7 312 68.6
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 5.5e-129 465.3 367 61.0
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 5.5e-129 465.3 323 67.5
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 7.2e-129 464.9 357 63.3
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 9.4e-129 464.5 355 63.7
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 2.1e-128 463.4 354 62.7
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.1e-128 463.4 354 64.1
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 2.1e-128 463.4 343 63.3
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 2.7e-128 463.0 357 62.5
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 2.7e-128 463.0 355 63.1
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 2.7e-128 463.0 333 65.8
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 3.6e-128 462.6 340 64.1
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 6.1e-128 461.8 354 64.1
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 1.0e-127 461.1 334 64.4
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 1.4e-127 460.7 311 68.5
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 2.3e-127 459.9 326 66.3
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 2.3e-127 459.9 354 63.6
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 2.3e-127 459.9 334 65.0
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 3.0e-127 459.5 331 65.0
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 3.9e-127 459.1 330 65.2
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 5.1e-127 458.8 344 63.4
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 6.7e-127 458.4 354 62.4
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 8.8e-127 458.0 300 69.3
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 1.1e-126 457.6 333 65.2
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 2.0e-126 456.8 310 67.4
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.0e-126 456.8 350 62.3
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 2.6e-126 456.4 333 64.6
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.6e-126 456.4 326 65.6
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 3.3e-126 456.1 343 61.8
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 4.4e-126 455.7 339 64.6
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 5.7e-126 455.3 313 65.8
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 7.4e-126 454.9 350 62.6
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 7.4e-126 454.9 350 62.6
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 7.4e-126 454.9 350 62.3
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 7.4e-126 454.9 313 65.5
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 7.4e-126 454.9 361 61.5
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 9.7e-126 454.5 350 62.0
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 9.7e-126 454.5 325 65.5
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 9.7e-126 454.5 325 65.5
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.3e-125 454.1 353 62.0
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 1.7e-125 453.8 352 63.1
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 1.7e-125 453.8 339 62.5
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 2.2e-125 453.4 300 69.0
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 2.2e-125 453.4 358 61.7
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.2e-125 453.4 353 61.8
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.2e-125 453.4 343 61.2
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 2.8e-125 453.0 382 58.1
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 2.8e-125 453.0 330 65.2
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 4.8e-125 452.2 380 59.7
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 6.3e-125 451.8 342 62.6
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 8.2e-125 451.4 350 62.0
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 8.2e-125 451.4 333 64.3
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.1e-124 451.1 311 66.9
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 1.8e-124 450.3 313 65.2
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 1.8e-124 450.3 316 66.8
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.4e-124 449.9 349 62.5
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 3.1e-124 449.5 340 62.6
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 4.1e-124 449.1 342 62.9
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 4.1e-124 449.1 339 61.4
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 5.3e-124 448.7 298 67.8
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 5.3e-124 448.7 366 60.1
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 5.3e-124 448.7 310 65.8
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 7.0e-124 448.4 341 63.0
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 9.1e-124 448.0 354 61.3
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 9.1e-124 448.0 322 65.8
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 1.2e-123 447.6 318 64.5
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 1.2e-123 447.6 311 65.9
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 1.2e-123 447.6 316 65.8
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.5e-123 447.2 308 67.2
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 2.0e-123 446.8 358 58.7
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.0e-123 446.8 340 61.2
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 2.6e-123 446.4 341 62.5
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 2.6e-123 446.4 300 67.0
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 3.5e-123 446.0 316 65.8
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 5.9e-123 445.3 300 66.3
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.0e-122 444.5 295 67.5
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 1.0e-122 444.5 328 64.3
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 1.3e-122 444.1 311 65.3
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 5.0e-122 442.2 301 66.8
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 5.0e-122 442.2 311 65.0
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 8.5e-122 441.4 302 67.5
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 8.5e-122 441.4 302 67.5
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 8.5e-122 441.4 302 67.5
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 8.5e-122 441.4 302 67.5
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 8.5e-122 441.4 302 67.5
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 1.1e-121 441.0 326 63.8
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 1.1e-121 441.0 328 64.0
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 1.1e-121 441.0 328 63.4
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 1.5e-121 440.7 328 64.0
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 2.5e-121 439.9 328 63.7
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 3.2e-121 439.5 328 64.3
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 5.5e-121 438.7 302 67.2
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 7.2e-121 438.3 327 63.6
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 9.4e-121 438.0 351 58.4
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 9.4e-121 438.0 318 63.8
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 1.6e-120 437.2 325 64.0
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.6e-120 437.2 304 66.8
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 6.1e-120 435.3 351 60.4
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 3.9e-119 432.6 319 64.6
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 5.7e-118 428.7 324 62.0
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 9.7e-118 427.9 291 66.7
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 7.0e-116 421.8 271 70.5
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 1.3e-114 417.5 379 55.7
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 2.9e-114 416.4 294 65.3
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 1.5e-113 414.1 301 63.1
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 5.5e-113 412.1 228 84.6
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 6.1e-112 408.7 354 58.2
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 5.2e-111 405.6 308 60.1
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 3.4e-110 402.9 416 49.8
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.3e-109 401.0 292 67.1
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 2.2e-109 400.2 308 60.7
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 4.1e-108 396.0 303 64.0
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 2.7e-107 393.3 323 58.8
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 3.5e-107 392.9 253 71.5
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 3.8e-106 389.4 273 64.8
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 1.5e-105 387.5 267 68.5
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 3.6e-104 382.9 359 53.8
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 1.2e-102 377.9 267 67.0
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 5.7e-102 375.6 302 59.9
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 6.6e-98 362.1 428 46.5
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 6.6e-98 362.1 328 55.8
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 1.2e-94 351.3 349 51.0
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 1.3e-93 347.8 336 53.6
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 3.5e-91 339.7 387 47.3
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 6.6e-90 335.5 336 52.1
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 2.0e-86 323.9 221 67.9
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 8.1e-80 302.0 220 62.7
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 4.7e-64 249.6 232 55.2
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 1.4e-55 221.5 149 69.1
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 3.1e-55 220.3 346 41.0
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 4.4e-54 216.5 193 56.0
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 3.5e-51 206.8 178 59.6
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 1.7e-37 161.4 164 49.4
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.9e-28 131.3 283 31.1
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 2.1e-27 127.9 89 64.0
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 1.5e-25 121.7 297 26.9
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 2.2e-24 117.9 338 28.7
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 3.1e-23 114.0 98 55.1
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 4.6e-19 100.1 394 25.1
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 3.0e-18 97.4 65 64.6
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 6.9e-15 86.3 59 64.4
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 4.5e-14 83.6 232 30.2
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 7.7e-14 82.8 61 59.0
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 7.7e-14 82.8 61 59.0
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 6.5e-13 79.7 61 57.4
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 2.6e-09 67.8 144 28.5
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 4.4e-09 67.0 33 87.9
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 5.7e-09 66.6 79 40.5
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 1.4e-07 62.0 46 58.7
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 3.1e-07 60.8 60 55.0
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 2.6e-06 57.8 35 71.4


User provided reference genes

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