Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0060s0108 Marchantia polymorpha HOM05D006207 ORTHO05D007868 6.4e-241 837.0 431 100.0
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 1.1e-46 191.8 430 34.4
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 5.4e-38 162.9 431 33.2
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 1.4e-33 148.3 438 32.4
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 6.2e-26 122.9 438 28.3
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 2.0e-24 117.9 431 26.7
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 6.6e-20 102.8 317 26.5
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 7.3e-19 99.4 130 48.5
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 1.2e-18 98.6 137 40.9
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 4.7e-18 96.7 334 26.6
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 8.1e-18 95.9 420 25.5
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 1.1e-17 95.5 323 26.9
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 1.4e-17 95.1 136 43.4
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 4.0e-17 93.6 426 24.9
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 4.0e-17 93.6 311 25.7
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 1.2e-16 92.0 432 25.9
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 2.0e-16 91.3 133 42.1
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 5.8e-16 89.7 419 24.6
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 9.9e-16 89.0 309 26.9
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 3.7e-15 87.0 125 40.8
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 3.7e-15 87.0 333 27.0
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 4.9e-15 86.7 119 39.5
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 1.4e-14 85.1 322 23.9
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 2.4e-14 84.3 125 37.6
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 2.4e-14 84.3 130 36.9
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 7.1e-14 82.8 119 37.8
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 1.2e-13 82.0 336 26.2
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 1.6e-13 81.6 131 38.2
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 1.6e-13 81.6 121 36.4
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.6e-13 81.6 309 26.5
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 1.6e-13 81.6 119 37.8
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 2.1e-13 81.3 123 40.7
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 4.6e-13 80.1 132 37.9
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 4.6e-13 80.1 122 38.5
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 4.6e-13 80.1 119 37.0
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 6.0e-13 79.7 335 24.8
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 6.0e-13 79.7 118 37.3
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 7.8e-13 79.3 122 34.4
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 7.8e-13 79.3 123 34.1
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 1.0e-12 79.0 306 25.2
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 1.0e-12 79.0 326 24.8
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.7e-12 78.2 119 39.5
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 1.7e-12 78.2 124 36.3
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 1.7e-12 78.2 122 39.3
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 3.0e-12 77.4 139 36.7
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 3.0e-12 77.4 124 36.3
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 5.1e-12 76.6 143 32.2
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 8.6e-12 75.9 119 36.1
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 8.6e-12 75.9 123 34.1
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 8.6e-12 75.9 367 25.3
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 1.5e-11 75.1 302 26.8
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 1.9e-11 74.7 133 33.8
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 1.9e-11 74.7 121 36.4
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 1.9e-11 74.7 127 33.1
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 2.5e-11 74.3 311 28.3
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 3.3e-11 73.9 126 31.7
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 4.3e-11 73.6 124 32.3
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 4.3e-11 73.6 125 32.0
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 4.3e-11 73.6 134 35.1
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 4.3e-11 73.6 419 23.9
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 7.3e-11 72.8 124 36.3
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 1.2e-10 72.0 119 35.3
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 2.1e-10 71.2 138 33.3
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 3.6e-10 70.5 136 33.1
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 4.7e-10 70.1 125 32.8
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 4.7e-10 70.1 121 38.0
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 6.2e-10 69.7 152 32.9
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 8.1e-10 69.3 432 23.1
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 8.1e-10 69.3 432 23.1
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 1.4e-09 68.6 121 31.4
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 1.8e-09 68.2 151 34.4
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 2.4e-09 67.8 430 23.0
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 3.1e-09 67.4 303 24.4
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 5.2e-09 66.6 430 23.0
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 5.2e-09 66.6 303 22.8
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 6.8e-09 66.2 142 35.9
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 1.5e-08 65.1 128 32.8
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 2.0e-08 64.7 65 46.2
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 2.0e-08 64.7 130 30.8
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 2.0e-08 64.7 148 33.1
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 2.6e-08 64.3 313 22.0
SEGI_11687 Sequoiadendron giganteum HOM05D003404 ORTHO05D000003 5.8e-08 63.2 90 35.6
SEGI_02198 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 7.6e-08 62.8 101 36.6
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 1.3e-07 62.0 136 31.6
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 1.7e-07 61.6 131 32.8
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 2.2e-07 61.2 203 30.5
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 2.9e-07 60.8 307 22.8
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 3.8e-07 60.5 122 32.8
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 4.9e-07 60.1 118 30.5
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 8.4e-07 59.3 127 33.1
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.1e-06 58.9 180 28.9
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 1.4e-06 58.5 303 22.4
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 1.9e-06 58.2 193 28.5
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 9.3e-06 55.8 122 29.5


User provided reference genes

Program Settings