Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 3.6e-294 1014.2 537 100.0
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 8.9e-192 674.1 519 68.0
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 6.0e-188 661.4 447 74.7
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 2.4e-184 649.4 427 78.0
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 4.0e-184 648.7 556 63.7
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 2.6e-183 646.0 442 74.0
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 1.1e-181 640.6 434 74.4
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 4.2e-181 638.6 520 67.5
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 4.2e-181 638.6 439 72.4
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 4.2e-181 638.6 442 73.5
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 5.4e-181 638.3 438 73.3
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 5.4e-181 638.3 434 74.7
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 7.1e-181 637.9 458 71.0
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 9.3e-181 637.5 438 73.1
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 9.3e-181 637.5 438 72.6
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 1.2e-180 637.1 443 72.2
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.6e-180 636.7 447 71.6
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.6e-180 636.7 434 74.0
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 2.1e-180 636.3 447 71.4
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.1e-180 636.3 438 72.8
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 2.7e-180 636.0 443 72.2
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 3.5e-180 635.6 443 72.7
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 3.5e-180 635.6 434 73.7
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 3.5e-180 635.6 447 72.5
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 4.6e-180 635.2 432 74.1
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 6.0e-180 634.8 437 73.5
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 6.0e-180 634.8 434 73.5
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 6.0e-180 634.8 445 71.5
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 7.9e-180 634.4 434 73.7
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 7.9e-180 634.4 436 72.9
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 1.0e-179 634.0 434 73.3
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 1.0e-179 634.0 433 73.7
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 1.0e-179 634.0 437 73.0
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.3e-179 633.6 438 73.3
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 1.7e-179 633.3 438 73.5
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.7e-179 633.3 438 73.3
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.3e-179 632.9 437 73.2
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.3e-179 632.9 438 73.7
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 3.9e-179 632.1 438 73.1
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.1e-179 631.7 437 73.7
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 5.1e-179 631.7 437 72.3
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 5.1e-179 631.7 433 73.2
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 6.6e-179 631.3 437 73.2
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 6.6e-179 631.3 446 73.3
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 6.6e-179 631.3 443 71.8
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 8.7e-179 630.9 437 73.0
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 8.7e-179 630.9 437 73.0
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 8.7e-179 630.9 438 74.0
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 1.1e-178 630.6 434 72.8
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.5e-178 630.2 430 73.5
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 1.5e-178 630.2 437 73.0
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 1.5e-178 630.2 451 71.2
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.5e-178 630.2 438 71.9
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.5e-178 630.2 434 73.3
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 1.9e-178 629.8 474 69.0
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 1.9e-178 629.8 443 71.6
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 2.5e-178 629.4 436 73.4
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 3.3e-178 629.0 437 72.3
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 4.3e-178 628.6 430 73.7
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 5.6e-178 628.2 447 70.5
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.3e-178 627.9 438 72.4
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.3e-178 627.9 438 72.1
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 9.6e-178 627.5 438 71.9
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 9.6e-178 627.5 438 71.9
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 1.3e-177 627.1 434 72.8
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 3.6e-177 625.5 438 71.9
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 6.2e-177 624.8 449 70.8
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 6.2e-177 624.8 438 71.7
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.1e-176 624.0 438 71.7
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 1.8e-176 623.2 433 72.3
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 2.4e-176 622.9 433 73.4
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 2.4e-176 622.9 444 70.7
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 3.1e-176 622.5 432 72.0
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 4.0e-176 622.1 435 71.7
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 4.0e-176 622.1 437 71.9
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 6.9e-176 621.3 433 72.1
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 6.9e-176 621.3 438 71.9
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 9.0e-176 620.9 434 72.6
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 1.5e-175 620.2 438 71.5
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 2.0e-175 619.8 438 71.5
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 2.6e-175 619.4 437 72.1
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.6e-175 619.4 431 72.9
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 3.4e-175 619.0 438 71.5
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 3.4e-175 619.0 438 71.5
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 3.4e-175 619.0 434 72.1
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 4.5e-175 618.6 438 71.0
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 4.5e-175 618.6 434 71.9
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 7.6e-175 617.8 434 71.4
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 9.9e-175 617.5 465 68.0
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 9.9e-175 617.5 442 70.4
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-174 616.7 438 71.5
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 1.7e-174 616.7 438 71.7
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 1.7e-174 616.7 437 71.9
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.2e-174 616.3 437 72.5
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 4.9e-174 615.1 434 71.7
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 4.9e-174 615.1 438 70.8
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 4.9e-174 615.1 438 71.2
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 4.9e-174 615.1 438 71.2
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 6.4e-174 614.8 434 71.4
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 8.4e-174 614.4 437 71.4
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 8.4e-174 614.4 437 71.4
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 8.4e-174 614.4 427 74.0
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.4e-174 614.4 438 71.2
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 1.1e-173 614.0 451 70.5
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 1.9e-173 613.2 434 71.4
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 3.2e-173 612.5 438 71.0
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 3.2e-173 612.5 434 71.2
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 9.3e-173 610.9 437 71.2
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 2.1e-172 609.8 432 71.5
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 2.1e-172 609.8 434 70.7
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 2.7e-172 609.4 459 68.2
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 5.1e-171 605.1 438 70.8
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 1.3e-169 600.5 438 69.6
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.4e-168 597.0 419 71.6
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 3.1e-168 595.9 401 75.6
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 2.6e-167 592.8 434 69.8
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 4.5e-167 592.0 461 66.4
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.8e-167 591.7 438 68.9
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 2.9e-166 589.3 447 67.8
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 7.1e-165 584.7 438 68.7
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.6e-164 582.0 438 67.8
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 4.6e-164 582.0 438 68.3
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 6.7e-163 578.2 427 70.5
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 7.4e-162 574.7 429 71.3
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.5e-159 565.5 385 74.3
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 6.9e-152 541.6 434 65.2
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 5.7e-138 495.4 351 70.7
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.0e-127 460.3 487 54.2
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.0e-123 448.0 319 71.2
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 7.5e-122 441.8 330 72.1
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.3e-121 441.0 486 50.6
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 1.1e-120 438.0 316 71.2
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 3.2e-104 383.3 258 74.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 2.0e-103 380.6 259 73.4
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.0e-102 378.3 258 74.0
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 1.0e-99 368.2 274 69.0
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 5.6e-93 345.9 233 74.2
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.1e-77 295.0 400 48.5
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 3.1e-75 287.0 202 72.3
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 1.2e-74 285.0 206 70.9
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 4.5e-66 256.5 426 40.1
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.3e-65 255.0 176 71.6
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 6.4e-65 252.7 191 70.2
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 1.5e-61 241.5 177 68.9
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 2.0e-58 231.1 293 45.1
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 1.7e-57 228.0 294 46.9
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.6e-55 221.5 217 57.1
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 6.7e-54 216.1 217 56.7
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.9e-53 214.5 217 55.8
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 4.0e-51 206.8 214 54.7
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 9.3e-48 195.7 215 51.6
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 6.7e-46 189.5 190 59.5
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 1.3e-44 185.3 120 74.2
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.9e-41 174.1 116 74.1
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.4e-34 150.6 89 80.9
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 5.5e-32 143.3 85 80.0
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 4.2e-24 117.1 131 45.0
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 2.0e-21 108.2 67 80.6
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 6.3e-20 103.2 161 39.8
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 1.6e-18 98.6 83 59.0
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 2.9e-17 94.4 65 75.4
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.1e-16 92.4 128 43.8
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 1.6e-15 88.6 206 35.4
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 2.3e-14 84.7 57 73.7
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.3e-14 84.7 126 43.7
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 1.7e-12 78.6 75 56.0
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 4.8e-12 77.0 58 65.5
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 8.2e-12 76.3 48 79.2
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 7.0e-11 73.2 69 60.9
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 2.0e-10 71.6 46 80.4
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 6.5e-09 66.6 37 86.5
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 1.1e-08 65.9 45 73.3
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 3.6e-07 60.8 31 90.3
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 4.7e-07 60.5 49 59.2
Lsat_1_v5_gn_3_28400 Lactuca sativa HOM05D001423 ORTHO05D048396 8.8e-06 56.2 43 67.4


User provided reference genes

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