Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0060s0082 Marchantia polymorpha HOM05D011343 ORTHO05D016526 0.0e+00 4883.5 2495 100.0
AagrBONN_evm.TU.Sc2ySwM_228.193 Anthoceros agrestis HOM05D011343 ORTHO05D016526 0.0e+00 3084.7 2515 62.1
Pp3c2_7460 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 2702.9 2410 57.8
Pp3c1_31160 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 2655.2 2438 57.1
Pp3c12_5580 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 1961.4 2289 46.7
Pp3c3_16200 Physcomitrium patens HOM05D011343 ORTHO05D016526 0.0e+00 1938.3 2324 45.7
SMO143G0325 Selaginella moellendorffii HOM05D011343 ORTHO05D016526 0.0e+00 1900.6 2441 43.7
SEGI_29173 Sequoiadendron giganteum HOM05D011343 ORTHO05D016526 0.0e+00 1444.9 1382 52.5
CBR_g37703 Chara braunii HOM05D011343 ORTHO05D016526 0.0e+00 1416.7 2309 37.3
SEGI_06827 Sequoiadendron giganteum HOM05D011343 ORTHO05D016526 6.8e-226 789.6 837 48.5
SEGI_34609 Sequoiadendron giganteum HOM05D011343 ORTHO05D384342 2.7e-89 335.9 287 58.9
SEGI_22943 Sequoiadendron giganteum HOM05D011343 ORTHO05D385027 1.2e-33 151.0 112 67.0
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 2.1e-25 123.6 598 24.6
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 3.6e-25 122.9 600 24.3
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 1.0e-24 121.3 600 24.3
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 2.3e-24 120.2 613 24.1
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 2.3e-24 120.2 598 24.2
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 5.2e-24 119.0 598 23.4
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 5.2e-24 119.0 652 23.9
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 5.2e-24 119.0 598 24.6
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 6.7e-24 118.6 598 24.6
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 8.8e-24 118.2 599 24.4
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 8.8e-24 118.2 598 24.9
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 1.1e-23 117.9 1164 22.0
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 1.1e-23 117.9 646 23.7
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 1.1e-23 117.9 596 23.5
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 1.5e-23 117.5 600 24.2
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 1.5e-23 117.5 599 24.0
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 2.0e-23 117.1 598 24.4
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 2.0e-23 117.1 597 23.6
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 3.3e-23 116.3 602 23.8
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 4.4e-23 115.9 594 24.1
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 5.7e-23 115.5 598 24.1
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 7.4e-23 115.2 600 24.2
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 7.4e-23 115.2 598 23.9
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 7.4e-23 115.2 600 24.3
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 9.7e-23 114.8 599 24.0
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 9.7e-23 114.8 601 23.5
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 9.7e-23 114.8 593 24.1
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 9.7e-23 114.8 598 24.1
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 9.7e-23 114.8 1047 21.3
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 1.3e-22 114.4 600 24.3
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 1.3e-22 114.4 598 24.6
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 1.7e-22 114.0 600 23.8
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 2.8e-22 113.2 600 23.8
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 3.7e-22 112.8 601 23.1
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 3.7e-22 112.8 598 24.1
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 3.7e-22 112.8 601 23.6
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 3.7e-22 112.8 604 23.5
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 4.8e-22 112.5 596 22.8
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 6.3e-22 112.1 602 23.6
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 6.3e-22 112.1 981 21.6
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 6.3e-22 112.1 601 23.0
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 6.3e-22 112.1 600 23.5
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 1.1e-21 111.3 581 23.6
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 1.1e-21 111.3 598 24.1
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 1.4e-21 110.9 598 23.4
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 1.4e-21 110.9 598 24.7
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 1.4e-21 110.9 598 24.6
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 1.4e-21 110.9 594 22.6
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 1.4e-21 110.9 605 24.1
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 1.8e-21 110.5 653 22.7
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 1.8e-21 110.5 598 24.2
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 1.8e-21 110.5 602 23.4
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.8e-21 110.5 602 23.4
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 2.4e-21 110.2 600 23.8
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 5.3e-21 109.0 600 23.3
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 5.3e-21 109.0 602 23.3
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 7.0e-21 108.6 597 24.0
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 9.1e-21 108.2 744 22.4
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 1.2e-20 107.8 607 23.9
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 1.6e-20 107.5 603 24.0
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 1.6e-20 107.5 598 23.6
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 1.6e-20 107.5 594 22.4
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 2.6e-20 106.7 598 23.9
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 5.9e-20 105.5 271 31.0
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 7.7e-20 105.1 600 23.3
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 1.0e-19 104.8 599 22.2
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 1.7e-19 104.0 761 23.1
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 5.0e-19 102.4 582 23.5
Nitab4.5_0002116g0040 Nicotiana tabacum HOM05D003720 ORTHO05D005312 5.0e-19 102.4 886 22.0
Sp4g08590 Schrenkiella parvula HOM05D003720 ORTHO05D005312 6.5e-19 102.1 761 23.3
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 1.1e-18 101.3 266 27.8
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 1.1e-18 101.3 241 30.7
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 1.5e-18 100.9 270 30.0
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 1.5e-18 100.9 274 29.9
Nitab4.5_0000100g0300 Nicotiana tabacum HOM05D003720 ORTHO05D005312 1.5e-18 100.9 241 29.9
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 1.9e-18 100.5 271 30.3
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 1.9e-18 100.5 241 30.3
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 1.9e-18 100.5 269 27.5
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 1.9e-18 100.5 241 31.1
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 2.5e-18 100.1 241 30.7
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 2.5e-18 100.1 241 31.1
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 3.2e-18 99.8 241 31.1
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 4.2e-18 99.4 240 30.8
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 5.5e-18 99.0 270 29.3
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 5.5e-18 99.0 270 29.3
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 5.5e-18 99.0 241 29.5
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 5.5e-18 99.0 237 27.8
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 5.5e-18 99.0 270 30.0
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 9.4e-18 98.2 237 28.7
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 9.4e-18 98.2 265 27.5
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 1.6e-17 97.4 324 28.1
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 2.7e-17 96.7 237 28.7
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 2.7e-17 96.7 596 22.5
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 2.7e-17 96.7 241 29.5
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 3.6e-17 96.3 270 29.3
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 3.6e-17 96.3 209 31.6
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 3.6e-17 96.3 237 28.3
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 3.6e-17 96.3 237 28.3
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 3.6e-17 96.3 237 28.3
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 8.0e-17 95.1 237 28.3
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 8.0e-17 95.1 260 27.3
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 8.0e-17 95.1 241 29.0
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 8.0e-17 95.1 241 29.0
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 1.0e-16 94.7 271 29.2
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 1.0e-16 94.7 241 29.0
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 1.4e-16 94.4 590 21.9
Cpa.g.sc23.156 Carica papaya HOM05D003720 ORTHO05D005312 2.3e-16 93.6 209 31.1
SEGI_21654 Sequoiadendron giganteum HOM05D011343 ORTHO05D006175 2.3e-16 93.6 108 45.4
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 3.0e-16 93.2 226 28.8
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 4.0e-16 92.8 241 28.6
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 6.7e-16 92.0 232 31.0
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 1.5e-15 90.9 240 30.0
Cre12.g486209 Chlamydomonas reinhardtii HOM05D003720 ORTHO05D005312 3.3e-15 89.7 222 30.6
SHI03184 Sapria himalayana HOM05D003720 ORTHO05D005312 4.4e-15 89.4 209 30.1
SEGI_06731 Sequoiadendron giganteum HOM05D011343 ORTHO05D385284 1.7e-14 87.4 108 44.4
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 4.8e-14 85.9 308 26.0
SEGI_11466 Sequoiadendron giganteum HOM05D011343 ORTHO05D386210 4.8e-14 85.9 74 50.0
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 1.2e-12 81.3 192 30.2
CDE07G1594 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 7.7e-12 78.6 205 27.3
CDE06G1063 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 1.4e-08 67.8 105 32.4
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 3.4e-07 63.2 509 22.0


User provided reference genes

Program Settings