Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 3.6e-126 454.9 224 100.0
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.2e-81 307.0 216 65.3
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 8.6e-80 300.8 216 65.3
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 3.4e-76 288.9 221 60.6
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 4.9e-75 285.0 219 60.7
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.9e-75 285.0 218 60.1
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 6.4e-75 284.6 218 60.6
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 2.4e-74 282.7 220 62.3
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 9.2e-74 280.8 217 61.8
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.6e-73 280.0 219 60.3
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.5e-73 278.9 218 59.6
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 4.6e-73 278.5 219 59.8
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 6.0e-73 278.1 221 60.2
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 7.8e-73 277.7 210 61.9
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 7.8e-73 277.7 212 62.7
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 1.7e-72 276.6 210 61.4
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.7e-72 276.6 210 62.4
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 3.0e-72 275.8 211 62.1
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 3.9e-72 275.4 218 60.1
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 5.0e-72 275.0 213 61.0
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 8.6e-72 274.2 216 60.6
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.1e-71 273.9 215 60.0
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 1.1e-71 273.9 220 60.0
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.5e-71 273.5 213 59.6
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 1.9e-71 273.1 211 61.1
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 2.5e-71 272.7 219 60.3
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 3.3e-71 272.3 221 59.3
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 3.3e-71 272.3 210 61.4
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 5.6e-71 271.6 214 60.7
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 5.6e-71 271.6 210 61.0
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 9.5e-71 270.8 210 62.4
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 9.5e-71 270.8 211 60.7
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.2e-70 270.4 211 59.2
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 1.2e-70 270.4 215 61.4
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 2.1e-70 269.6 211 60.7
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 2.1e-70 269.6 211 61.1
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 2.8e-70 269.2 224 58.0
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 3.6e-70 268.9 211 59.2
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 8.1e-70 267.7 215 59.1
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 1.4e-69 266.9 215 59.5
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 4.0e-69 265.4 210 60.0
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.2e-68 263.8 221 57.9
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 3.4e-68 262.3 214 58.4
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 3.4e-68 262.3 219 58.0
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 4.4e-68 261.9 211 58.8
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 4.4e-68 261.9 211 58.8
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 4.4e-68 261.9 218 59.6
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 7.5e-68 261.2 211 58.8
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 7.5e-68 261.2 219 57.5
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.3e-67 260.4 212 59.9
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 1.7e-67 260.0 214 57.9
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.7e-67 260.0 223 55.2
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 2.9e-67 259.2 213 57.7
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 2.9e-67 259.2 214 57.5
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 2.9e-67 259.2 214 57.5
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 2.9e-67 259.2 210 59.5
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 2.9e-67 259.2 220 55.0
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 3.7e-67 258.8 210 58.6
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 1.1e-66 257.3 211 56.4
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 1.4e-66 256.9 211 57.8
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-66 256.9 211 59.7
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-66 256.9 211 59.7
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-66 256.9 211 59.7
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-66 256.9 211 59.7
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-66 256.9 211 59.7
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 1.9e-66 256.5 218 56.4
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 2.4e-66 256.1 220 56.8
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 4.1e-66 255.4 216 56.0
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 7.1e-66 254.6 201 59.7
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 9.2e-66 254.2 219 56.6
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.6e-65 253.4 224 54.5
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 2.1e-65 253.1 211 58.3
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 4.6e-65 251.9 211 57.8
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 4.6e-65 251.9 210 56.7
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 6.0e-65 251.5 211 58.8
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 7.8e-65 251.1 220 57.7
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 1.7e-64 250.0 215 54.0
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 5.1e-64 248.4 213 55.4
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 8.6e-64 247.7 217 54.8
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.1e-63 247.3 221 56.1
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.1e-63 247.3 221 56.1
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 2.5e-63 246.1 210 56.7
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 1.2e-60 237.3 211 55.5
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 3.4e-60 235.7 215 53.5
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 3.4e-60 235.7 220 53.6
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 5.8e-60 235.0 212 52.8
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 5.8e-60 235.0 220 52.7
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 1.3e-59 233.8 219 53.0
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.7e-59 233.4 217 54.4
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.7e-59 233.4 214 54.2
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.7e-59 233.4 214 54.2
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.2e-58 229.2 210 53.8
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 3.2e-58 229.2 211 54.0
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 5.4e-58 228.4 210 53.8
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 5.4e-58 228.4 223 52.0
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 9.2e-58 227.6 212 52.4
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 1.2e-57 227.3 215 53.0
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 2.1e-57 226.5 178 60.1
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 2.7e-57 226.1 219 52.1
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 3.5e-57 225.7 209 53.6
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 7.8e-57 224.6 180 60.6
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 7.8e-57 224.6 217 53.0
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 5.1e-56 221.9 218 51.4
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 6.6e-56 221.5 211 53.6
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 1.5e-55 220.3 220 51.8
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 5.6e-55 218.4 218 50.5
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 5.6e-55 218.4 218 50.5
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 9.6e-55 217.6 211 52.6
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.2e-54 217.2 217 49.8
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 1.6e-54 216.9 217 51.2
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 2.1e-54 216.5 211 51.7
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 8.1e-54 214.5 211 52.6
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.1e-53 214.2 215 50.7
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.4e-53 213.8 216 50.5
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 1.4e-53 213.8 213 47.9
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.8e-53 213.4 210 48.6
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 3.1e-53 212.6 211 50.7
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 3.1e-53 212.6 211 50.7
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 4.0e-53 212.2 213 50.7
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 1.7e-48 196.8 162 58.0
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 8.7e-48 194.5 211 47.9
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.6e-46 190.3 168 56.0
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.1e-46 189.9 161 59.0
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 5.3e-45 185.3 211 47.4
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 4.4e-44 182.2 165 56.4
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.3e-43 180.6 169 52.1
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 2.3e-40 169.9 171 50.3
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 9.6e-39 164.5 216 44.0
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 2.8e-38 162.9 211 42.2
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 8.1e-38 161.4 128 58.6
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 1.2e-33 147.5 209 41.1
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 2.1e-33 146.7 129 54.3
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 3.0e-32 142.9 128 51.6
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 4.8e-30 135.6 129 51.9
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.4e-29 134.0 217 39.2
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 4.2e-26 122.5 101 59.4
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 1.5e-23 114.0 94 55.3
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 3.3e-23 112.8 87 57.5
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 2.7e-17 93.2 179 36.3
MCO09G464 Micromonas commoda HOM05D005542 ORTHO05D006708 9.7e-07 58.2 139 32.4
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 2.2e-06 57.0 137 31.4


User provided reference genes

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