Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 0.0e+00 1681.0 856 100.0
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.1e-241 840.5 842 50.5
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.2e-235 820.5 848 49.3
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 1.5e-201 707.2 852 44.2
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 1.9e-199 700.3 850 44.0
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 4.1e-199 699.1 850 44.0
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 3.9e-197 692.6 853 43.5
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 6.6e-197 691.8 832 44.8
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 1.1e-196 691.0 833 44.8
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 1.5e-196 690.6 834 43.5
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 2.5e-196 689.9 835 44.3
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 1.2e-195 687.6 837 45.2
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 6.2e-195 685.3 836 43.9
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 1.8e-194 683.7 836 44.1
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 4.0e-194 682.6 834 43.4
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 5.2e-194 682.2 834 44.4
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 1.2e-193 681.0 835 43.7
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 3.4e-193 679.5 834 43.4
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 4.4e-193 679.1 838 43.9
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 5.8e-193 678.7 852 42.7
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 1.3e-192 677.6 839 43.7
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 2.9e-192 676.4 836 43.4
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 3.8e-192 676.0 837 42.5
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 1.1e-191 674.5 836 43.3
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 1.1e-191 674.5 837 42.4
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 1.1e-191 674.5 833 43.6
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 1.1e-191 674.5 835 43.4
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 1.4e-191 674.1 835 43.2
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 1.2e-190 671.0 837 42.2
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 2.1e-190 670.2 846 42.3
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 4.6e-190 669.1 836 42.7
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 3.9e-189 666.0 837 41.8
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 5.1e-189 665.6 837 42.2
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 6.6e-189 665.2 835 43.5
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 6.6e-189 665.2 848 42.9
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 8.6e-189 664.8 835 43.0
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 1.9e-188 663.7 835 43.7
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 3.3e-188 662.9 836 42.3
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 3.3e-188 662.9 836 43.5
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 5.6e-188 662.1 844 42.9
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 7.3e-188 661.8 866 41.5
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 9.6e-188 661.4 835 43.0
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 9.6e-188 661.4 835 43.0
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 1.2e-187 661.0 835 43.2
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 1.6e-187 660.6 835 42.5
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-187 660.6 835 43.4
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 1.6e-187 660.6 835 43.6
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 2.8e-187 659.8 835 43.6
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 3.6e-187 659.4 849 43.1
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 3.6e-187 659.4 849 43.1
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 6.2e-187 658.7 835 43.0
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 8.1e-187 658.3 835 42.9
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 5.2e-186 655.6 835 43.6
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 6.9e-186 655.2 848 40.6
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 1.5e-185 654.1 839 42.7
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 5.8e-185 652.1 846 42.0
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 8.4e-184 648.3 828 44.3
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 1.4e-183 647.5 839 42.6
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 2.4e-183 646.7 834 42.8
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 4.2e-183 646.0 840 41.4
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 4.2e-183 646.0 835 42.9
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 1.6e-182 644.0 885 40.3
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 3.5e-182 642.9 851 41.2
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 1.0e-181 641.3 835 41.8
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 1.7e-181 640.6 915 40.1
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 2.3e-181 640.2 837 41.7
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 1.9e-180 637.1 868 41.2
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 3.3e-180 636.3 835 41.4
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 5.6e-180 635.6 835 41.2
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 5.6e-180 635.6 833 42.0
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 8.1e-179 631.7 834 40.2
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 2.0e-177 627.1 837 41.1
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 1.3e-176 624.4 884 39.5
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 2.2e-176 623.6 917 38.9
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 6.4e-176 622.1 837 41.2
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 1.9e-175 620.5 833 41.8
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 1.9e-175 620.5 882 39.5
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 5.4e-175 619.0 869 40.0
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 1.6e-174 617.5 848 40.3
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 1.0e-173 614.8 848 40.1
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 1.9e-172 610.5 843 40.1
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 9.0e-170 601.7 835 40.7
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 5.8e-169 599.0 835 39.9
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 9.9e-169 598.2 833 40.1
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.9e-167 594.0 839 42.8
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 1.6e-166 590.9 828 40.1
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 2.7e-166 590.1 851 39.1
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 2.3e-165 587.0 835 40.2
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 1.6e-163 580.9 876 38.6
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 6.2e-163 578.9 845 40.0
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 6.2e-163 578.9 850 38.9
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 8.2e-163 578.6 620 49.2
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 9.3e-159 565.1 846 39.4
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.3e-157 560.5 865 39.1
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 6.7e-157 558.9 835 39.3
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 6.7e-157 558.9 814 39.6
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.4e-154 550.4 526 53.0
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 4.1e-154 549.7 858 38.7
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 6.3e-147 525.8 641 43.4
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 9.1e-138 495.4 828 36.2
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 3.3e-132 476.9 833 34.7
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 8.2e-131 472.2 693 39.4
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 1.9e-119 434.5 463 46.4
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 1.4e-114 418.3 998 32.0
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 4.1e-114 416.8 660 36.5
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 2.5e-111 407.5 773 34.5
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 7.5e-108 396.0 508 43.1
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 4.9e-107 393.3 752 32.3
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.2e-105 388.7 678 35.0
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.9e-103 381.3 511 42.1
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 2.6e-92 344.4 577 36.4
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 3.4e-92 344.0 577 36.4
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 3.4e-92 344.0 548 36.7
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 7.5e-92 342.8 596 35.7
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.0e-88 332.4 506 38.5
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.9e-79 301.6 437 37.3
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.2e-78 298.9 440 38.6
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 4.0e-77 293.9 869 27.0
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 3.8e-67 260.8 350 40.3
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.1e-66 259.2 353 42.2
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 1.6e-62 245.4 869 26.8
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 2.9e-59 234.6 345 38.3
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.6e-44 184.9 198 49.5
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 3.9e-40 171.0 193 44.6
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.1e-37 162.9 178 47.8
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 5.0e-35 154.1 218 38.5
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.9e-34 152.1 387 28.9
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.4e-32 146.0 164 44.5
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.8e-27 127.9 151 41.7
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.1e-26 126.3 253 32.4
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.1e-26 126.3 243 32.1
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 6.1e-25 120.6 292 30.5
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 1.7e-19 102.4 88 53.4
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.1e-17 95.5 113 42.5
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 4.7e-17 94.4 77 57.1
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 2.2e-14 85.5 71 49.3
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 6.3e-14 84.0 84 48.8
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.2e-09 69.7 97 40.2
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 9.7e-07 60.1 69 43.5
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 2.2e-06 58.9 96 39.6


User provided reference genes

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