Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 2.4e-187 658.7 328 100.0
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.9e-100 369.4 276 65.2
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 8.4e-100 367.9 277 65.7
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 6.0e-82 308.5 273 58.6
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.6e-79 300.4 265 55.1
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 3.5e-74 282.7 281 51.2
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.8e-71 273.1 277 49.8
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 6.3e-71 271.9 280 49.3
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.4e-70 270.8 282 49.6
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 9.0e-70 268.1 276 47.1
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.0e-69 266.9 298 48.0
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 4.5e-69 265.8 279 47.0
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 4.5e-69 265.8 276 47.1
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 5.9e-69 265.4 273 47.3
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 7.6e-69 265.0 279 49.5
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 1.7e-68 263.8 276 47.5
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.7e-68 263.8 288 45.8
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 2.2e-68 263.5 279 48.7
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 2.9e-68 263.1 279 46.6
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 3.8e-68 262.7 273 46.9
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 3.8e-68 262.7 276 47.5
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 6.5e-68 261.9 279 47.0
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 8.5e-68 261.5 276 47.5
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.1e-67 261.2 279 45.5
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.1e-67 261.2 277 47.3
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 1.9e-67 260.4 279 47.7
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 2.5e-67 260.0 276 46.7
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 4.2e-67 259.2 279 47.0
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.6e-66 257.3 289 46.4
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 2.1e-66 256.9 276 46.0
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.1e-66 256.9 279 45.5
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 2.7e-66 256.5 282 45.0
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.7e-66 256.5 276 46.4
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 3.6e-66 256.1 280 48.2
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 6.1e-66 255.4 299 45.5
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 7.9e-66 255.0 280 44.6
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.0e-65 254.6 289 46.0
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.0e-65 254.6 276 45.3
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 1.0e-65 254.6 280 44.6
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 1.3e-65 254.2 273 45.8
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.3e-65 254.2 279 46.2
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 3.0e-65 253.1 285 45.6
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 3.0e-65 253.1 283 48.1
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 3.9e-65 252.7 280 47.1
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 3.9e-65 252.7 277 46.6
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 5.1e-65 252.3 273 47.3
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 6.7e-65 251.9 280 45.0
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 6.7e-65 251.9 283 45.2
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 6.7e-65 251.9 275 46.9
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 6.7e-65 251.9 287 44.6
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.1e-64 251.1 289 46.4
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 1.5e-64 250.8 287 44.9
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.5e-64 250.8 279 45.2
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 1.5e-64 250.8 283 45.9
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 1.9e-64 250.4 280 47.1
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 1.9e-64 250.4 287 45.6
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 2.5e-64 250.0 279 45.9
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 2.5e-64 250.0 279 44.4
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 4.3e-64 249.2 280 47.5
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 4.3e-64 249.2 279 46.6
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.3e-64 249.2 279 46.2
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 4.3e-64 249.2 280 48.2
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 5.7e-64 248.8 276 45.3
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 5.7e-64 248.8 279 46.2
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 5.7e-64 248.8 286 45.5
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 5.7e-64 248.8 287 43.9
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 5.7e-64 248.8 279 45.5
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 7.4e-64 248.4 279 46.2
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 9.7e-64 248.1 289 45.0
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 9.7e-64 248.1 283 45.6
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.3e-63 247.7 279 44.1
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.2e-63 246.9 283 46.3
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 2.8e-63 246.5 279 46.6
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.7e-63 246.1 279 45.9
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 4.8e-63 245.7 341 40.8
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.8e-63 245.7 279 45.9
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 4.8e-63 245.7 273 46.9
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 4.8e-63 245.7 279 46.2
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 4.8e-63 245.7 276 47.1
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 6.3e-63 245.4 276 47.1
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.1e-62 244.6 280 44.6
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.4e-62 244.2 279 45.2
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.4e-62 243.4 283 46.3
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 2.4e-62 243.4 276 45.7
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 3.1e-62 243.0 273 46.2
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 3.1e-62 243.0 275 44.4
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 3.1e-62 243.0 279 45.5
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 5.3e-62 242.3 286 43.7
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 5.3e-62 242.3 279 45.9
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 6.9e-62 241.9 273 46.5
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 6.9e-62 241.9 274 45.3
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 6.9e-62 241.9 279 45.2
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 6.9e-62 241.9 276 45.3
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 9.1e-62 241.5 273 46.2
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 1.2e-61 241.1 279 46.2
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 1.2e-61 241.1 281 45.6
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 1.5e-61 240.7 280 47.1
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 2.0e-61 240.4 279 45.2
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 5.9e-61 238.8 294 46.3
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 7.7e-61 238.4 264 46.6
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 1.0e-60 238.0 266 45.1
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.0e-60 238.0 289 45.0
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.0e-60 238.0 280 43.9
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.0e-60 238.0 286 43.4
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.3e-60 237.7 283 44.5
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 2.2e-60 236.9 279 44.4
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 2.2e-60 236.9 270 45.2
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 5.0e-60 235.7 279 45.5
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 6.5e-60 235.3 279 44.4
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 6.5e-60 235.3 276 44.6
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 1.9e-59 233.8 264 45.1
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 3.2e-59 233.0 263 44.5
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 5.5e-59 232.3 291 45.0
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 2.1e-58 230.3 270 45.6
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.8e-57 227.3 280 44.3
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.0e-53 213.8 276 43.1
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.7e-52 210.7 276 41.7
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 2.2e-52 210.3 282 41.8
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 1.1e-51 208.0 275 42.2
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 3.0e-41 173.3 274 36.9
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 3.0e-41 173.3 256 40.2
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 9.7e-40 168.3 187 44.9
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 2.9e-36 156.8 161 48.4
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.3e-33 147.1 164 45.1
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 6.8e-25 119.0 134 45.5
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 8.3e-23 112.1 121 48.8
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 4.3e-19 99.8 80 58.8
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 2.2e-15 87.4 127 36.2
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 1.7e-12 77.8 127 33.1
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 8.6e-12 75.5 65 55.4
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 7.3e-11 72.4 62 54.8
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 6.2e-10 69.3 59 57.6
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 6.2e-10 69.3 59 57.6
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 3.1e-09 67.0 79 46.8
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 7.5e-08 62.4 167 28.1
THA.LOC104798731 Tarenaya hassleriana HOM05D000559 ORTHO05D000596 3.7e-07 60.1 282 25.2
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 2.4e-06 57.4 88 34.1
Actinidia31799 Actinidia chinensis HOM05D000559 ORTHO05D000596 5.4e-06 56.2 101 32.7
CANSAT56G3609 Cannabis sativa HOM05D000559 ORTHO05D000596 5.4e-06 56.2 91 38.5
CSS0045652 Camellia sinensis var. sinensis HOM05D000559 ORTHO05D000596 7.0e-06 55.8 98 32.7
Lsat_1_v5_gn_4_132241 Lactuca sativa HOM05D000559 ORTHO05D000596 7.0e-06 55.8 279 22.6


User provided reference genes

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