Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 3.0e-243 844.7 427 100.0
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 1.3e-121 440.7 320 63.4
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.3e-121 440.7 329 62.6
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 6.6e-121 438.3 318 62.6
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 8.6e-121 438.0 329 61.4
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 8.6e-121 438.0 381 56.7
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.1e-120 437.6 318 63.5
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.5e-120 437.2 318 62.6
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.5e-120 437.2 330 61.5
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.9e-120 436.8 318 62.3
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.5e-120 436.4 318 62.3
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 2.5e-120 436.4 296 67.6
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.5e-120 436.4 323 62.8
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 3.3e-120 436.0 321 62.9
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 4.3e-120 435.6 318 62.9
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 5.6e-120 435.3 315 62.5
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 1.6e-119 433.7 318 62.3
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.6e-119 433.7 319 62.7
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.6e-119 433.7 333 60.4
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.1e-119 433.3 318 62.6
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.1e-119 433.3 322 62.4
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 2.8e-119 433.0 318 62.6
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 4.7e-119 432.2 318 62.3
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 4.7e-119 432.2 317 62.5
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 6.1e-119 431.8 354 58.5
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 6.1e-119 431.8 315 62.5
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.0e-119 431.4 320 61.6
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.4e-118 430.6 327 62.1
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.4e-118 430.6 325 61.2
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 1.4e-118 430.6 338 59.2
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 1.4e-118 430.6 315 62.9
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 1.8e-118 430.3 315 62.5
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 1.8e-118 430.3 318 63.5
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.8e-118 430.3 318 62.3
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.3e-118 429.9 320 61.2
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 3.1e-118 429.5 318 61.0
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 4.0e-118 429.1 318 61.0
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 4.0e-118 429.1 334 59.6
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 4.0e-118 429.1 326 61.0
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 4.0e-118 429.1 340 60.0
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 5.2e-118 428.7 354 58.2
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 6.8e-118 428.3 354 58.2
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 6.8e-118 428.3 370 57.3
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 6.8e-118 428.3 321 60.4
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 8.9e-118 427.9 315 61.9
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 8.9e-118 427.9 337 59.6
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 1.2e-117 427.6 318 62.3
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 1.2e-117 427.6 318 61.3
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.5e-117 427.2 303 64.0
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.5e-117 427.2 315 61.9
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.0e-117 426.8 347 59.7
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.0e-117 426.8 315 61.3
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 2.0e-117 426.8 297 65.0
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.6e-117 426.4 315 61.6
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.6e-117 426.4 307 63.2
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 2.6e-117 426.4 315 62.9
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 3.4e-117 426.0 381 55.4
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 4.4e-117 425.6 295 65.8
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 4.4e-117 425.6 317 61.5
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 4.4e-117 425.6 315 61.6
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 4.4e-117 425.6 296 65.2
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 5.8e-117 425.2 329 61.7
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 7.5e-117 424.9 320 61.6
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 1.3e-116 424.1 316 62.7
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.3e-116 424.1 325 60.3
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.3e-116 424.1 341 58.9
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 1.7e-116 423.7 328 59.8
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 2.2e-116 423.3 325 60.9
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.2e-116 423.3 318 60.1
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.9e-116 422.9 314 61.8
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 2.9e-116 422.9 314 61.1
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 4.9e-116 422.2 306 65.7
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 4.9e-116 422.2 326 60.1
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 4.9e-116 422.2 317 61.2
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 6.4e-116 421.8 315 61.0
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 8.3e-116 421.4 315 61.6
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 8.3e-116 421.4 317 60.9
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 1.1e-115 421.0 316 61.1
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 1.1e-115 421.0 343 57.4
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.1e-115 421.0 317 60.6
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.1e-115 421.0 318 60.7
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.1e-115 421.0 327 58.4
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.4e-115 420.6 318 61.0
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.9e-115 420.2 318 60.1
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.9e-115 420.2 340 57.6
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 5.4e-115 418.7 332 59.0
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 5.4e-115 418.7 332 59.0
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 5.4e-115 418.7 332 59.0
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 5.4e-115 418.7 332 59.0
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 5.4e-115 418.7 332 59.0
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 5.4e-115 418.7 315 61.0
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 5.4e-115 418.7 323 60.4
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 7.0e-115 418.3 324 61.1
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 9.2e-115 417.9 354 57.3
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.2e-114 417.5 338 59.8
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 2.0e-114 416.8 315 61.0
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 3.5e-114 416.0 353 57.2
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 3.5e-114 416.0 296 62.2
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 4.6e-114 415.6 354 57.3
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 1.0e-113 414.5 325 58.8
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.0e-113 414.5 296 63.2
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 1.3e-113 414.1 332 58.1
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 1.7e-113 413.7 318 59.4
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.7e-113 413.7 318 58.5
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 8.6e-113 411.4 299 61.5
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 1.2e-111 407.5 295 62.0
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 6.2e-111 405.2 313 59.7
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 1.1e-110 404.4 324 59.9
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 1.8e-110 403.7 297 60.6
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 3.1e-110 402.9 358 53.4
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 6.8e-110 401.7 320 59.1
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.2e-109 401.0 315 60.0
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.0e-109 400.2 317 59.0
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 5.8e-109 398.7 294 62.6
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 9.8e-109 397.9 294 62.9
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 5.4e-107 392.1 300 59.3
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 7.8e-106 388.3 296 60.1
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 6.6e-105 385.2 307 57.0
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 5.6e-104 382.1 296 60.8
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 2.1e-103 380.2 302 59.3
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 4.7e-103 379.0 287 61.3
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.8e-102 377.1 290 57.6
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 6.8e-102 375.2 318 55.7
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 2.6e-101 373.2 324 55.9
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 8.3e-100 368.2 320 53.1
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 1.1e-99 367.9 323 54.8
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 1.9e-99 367.1 287 60.6
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 4.1e-99 365.9 272 60.7
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 1.0e-97 361.3 318 54.4
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 2.4e-94 350.1 256 61.7
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 2.4e-94 350.1 256 61.7
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 5.8e-93 345.5 263 59.7
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 1.1e-91 341.3 299 56.2
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 2.4e-91 340.1 350 50.6
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 2.7e-90 336.7 284 56.3
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 4.6e-90 335.9 251 61.0
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.6e-82 310.8 299 50.8
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 4.6e-82 309.3 223 61.9
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 8.7e-81 305.1 265 54.7
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 3.8e-76 289.7 246 56.9
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 2.7e-74 283.5 265 53.2
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.9e-73 279.6 228 57.5
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.1e-70 271.6 361 41.6
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 2.0e-69 267.3 299 45.5
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.5e-69 266.2 196 61.2
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.3e-68 264.6 223 55.2
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 3.2e-67 260.0 193 61.1
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.6e-66 257.7 300 47.3
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 4.3e-64 249.6 320 44.4
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 9.0e-62 241.9 230 50.4
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 3.2e-59 233.4 171 60.8
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 4.8e-55 219.5 371 36.9
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 7.7e-53 212.2 220 51.8
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 2.1e-50 204.1 194 51.0
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.1e-46 191.8 291 40.5
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 9.7e-40 168.7 108 69.4
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.5e-35 154.1 151 49.0
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 4.5e-29 133.3 122 54.1
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 3.2e-27 127.1 423 30.0
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 7.2e-27 125.9 94 62.8
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 9.4e-27 125.6 89 65.2
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 6.1e-26 122.9 131 48.9
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 6.1e-26 122.9 131 48.9
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 1.0e-25 122.1 89 62.9
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 1.0e-25 122.1 82 64.6
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 4.0e-25 120.2 131 48.1
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 3.2e-19 100.5 61 70.5
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 4.2e-19 100.1 74 63.5
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.6e-18 98.2 64 71.9
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 3.6e-18 97.1 98 46.9
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 3.6e-18 97.1 71 63.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 4.0e-17 93.6 279 29.4
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 6.3e-15 86.3 65 69.2
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.1e-14 85.5 133 38.3
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.6e-13 81.6 89 49.4
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 5.0e-12 76.6 59 57.6
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 3.3e-11 73.9 123 36.6
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 6.1e-10 69.7 42 71.4
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.0e-08 64.7 43 67.4
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.7e-07 61.6 39 74.4
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.7e-07 61.6 39 74.4
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 1.4e-06 58.5 44 56.8


User provided reference genes

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