Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 2.1e-97 359.4 231 100.0
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 3.9e-59 232.3 231 64.5
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 3.6e-57 225.7 226 61.9
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.4e-56 223.8 226 65.0
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 3.1e-56 222.6 226 61.1
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 6.8e-56 221.5 226 63.3
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 1.5e-55 220.3 226 61.1
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 2.6e-55 219.5 227 61.7
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 3.4e-55 219.2 227 61.7
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 5.8e-55 218.4 226 62.8
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 7.5e-55 218.0 230 67.8
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 9.9e-55 217.6 226 60.2
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 3.7e-54 215.7 226 57.1
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 4.9e-54 215.3 226 62.8
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 8.3e-54 214.5 228 67.5
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 1.1e-53 214.2 228 65.8
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 2.4e-53 213.0 226 60.2
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 2.4e-53 213.0 228 59.6
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 5.4e-53 211.8 226 51.8
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 1.2e-52 210.7 227 62.6
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.2e-52 210.7 228 62.7
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.6e-52 210.3 226 62.4
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.6e-52 210.3 226 62.4
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.6e-52 210.3 228 66.7
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 2.1e-52 209.9 226 58.8
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 1.0e-51 207.6 226 57.5
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 2.3e-51 206.5 226 61.1
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 3.9e-51 205.7 226 60.6
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 6.6e-51 204.9 231 58.4
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 6.6e-51 204.9 226 60.2
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.1e-50 204.1 226 56.6
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 4.3e-50 202.2 226 57.5
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.1e-49 199.9 231 58.0
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.1e-48 197.6 226 65.0
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 1.1e-48 197.6 228 54.4
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 1.1e-48 197.6 225 57.8
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 1.4e-48 197.2 231 58.4
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 1.8e-48 196.8 226 60.6
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 3.1e-48 196.1 226 58.0
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 4.0e-48 195.7 226 52.7
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 6.8e-48 194.9 227 61.2
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 8.9e-48 194.5 231 56.7
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 1.5e-47 193.7 226 59.7
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 2.0e-47 193.4 222 60.4
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 2.0e-47 193.4 228 57.5
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 2.0e-47 193.4 226 60.2
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 7.6e-47 191.4 229 50.2
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 7.6e-47 191.4 226 58.0
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 9.9e-47 191.0 225 57.8
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 9.9e-47 191.0 229 63.8
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 1.3e-46 190.7 222 57.7
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 3.8e-46 189.1 233 62.2
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 4.9e-46 188.7 233 53.6
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 6.4e-46 188.3 226 56.6
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 8.4e-46 188.0 227 55.5
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 8.4e-46 188.0 228 57.9
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 2.4e-45 186.4 226 58.0
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 2.4e-45 186.4 231 53.2
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 2.4e-45 186.4 231 53.2
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 3.2e-45 186.0 231 56.3
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 3.2e-45 186.0 261 57.5
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 4.2e-45 185.7 245 55.1
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 4.2e-45 185.7 226 59.3
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 4.2e-45 185.7 230 48.7
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 7.1e-45 184.9 228 57.9
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 7.1e-45 184.9 226 57.5
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 9.2e-45 184.5 226 61.1
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 9.2e-45 184.5 222 55.0
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 2.7e-44 183.0 226 56.2
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.5e-44 182.6 228 52.2
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 6.0e-44 181.8 226 59.3
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 6.0e-44 181.8 226 58.8
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 1.0e-43 181.0 222 52.7
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.0e-43 181.0 225 56.0
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.0e-43 181.0 223 47.1
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 3.0e-43 179.5 227 58.1
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 6.6e-43 178.3 226 53.1
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 6.6e-43 178.3 226 57.1
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 8.7e-43 177.9 226 55.8
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 1.1e-42 177.6 227 60.8
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 1.9e-42 176.8 245 52.7
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.3e-42 176.0 226 55.3
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 1.2e-41 174.1 226 59.3
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 3.6e-41 172.6 222 52.3
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 4.7e-41 172.2 226 54.9
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 4.0e-40 169.1 233 53.6
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 4.0e-40 169.1 226 53.5
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.2e-39 167.5 147 61.9
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.5e-39 167.2 226 57.5
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 1.5e-39 167.2 226 54.9
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 4.4e-39 165.6 230 53.5
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 5.8e-39 165.2 229 56.3
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 9.9e-39 164.5 231 50.6
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 1.3e-38 164.1 226 53.5
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 2.2e-38 163.3 226 57.5
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 8.4e-38 161.4 226 53.1
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.9e-37 160.2 226 56.6
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 1.7e-35 153.7 226 54.0
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 3.9e-35 152.5 226 52.2
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 1.1e-34 151.0 329 40.7
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 4.3e-34 149.1 226 56.6
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 7.3e-34 148.3 226 56.2
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 9.6e-34 147.9 226 56.2
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 2.1e-33 146.7 226 56.2
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 4.8e-33 145.6 225 50.7
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 3.1e-32 142.9 226 55.3
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 6.9e-32 141.7 226 54.9
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 1.2e-31 141.0 226 55.3
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 5.8e-31 138.7 211 56.9
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 5.8e-31 138.7 95 71.6
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 1.3e-30 137.5 226 54.9
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 3.8e-30 136.0 231 48.5
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 3.8e-30 136.0 225 50.2
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 4.9e-30 135.6 225 49.3
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 6.4e-30 135.2 231 48.1
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 1.0e-27 127.9 226 50.9
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.1e-21 107.8 224 37.1
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.4e-21 107.5 188 47.3
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 7.1e-21 105.1 53 88.7
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 6.7e-19 98.6 93 51.6
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.6e-17 94.0 226 33.2
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 4.8e-17 92.4 221 36.2
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 5.8e-15 85.5 78 55.1
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 7.6e-15 85.1 231 32.5
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 1.3e-14 84.3 226 31.9
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 1.7e-14 84.0 126 42.1
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 1.6e-12 77.4 68 55.9
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 4.3e-10 69.3 216 34.7


User provided reference genes

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