Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 1.0e-285 986.1 516 100.0
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 7.5e-196 687.6 514 67.5
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 9.8e-196 687.2 514 66.5
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 1.3e-195 686.8 514 67.5
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 1.7e-195 686.4 514 67.1
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 2.2e-195 686.0 514 67.3
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 2.2e-195 686.0 514 67.1
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 4.9e-195 684.9 514 66.9
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 1.4e-194 683.3 514 66.7
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 1.8e-194 682.9 514 67.3
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 2.4e-194 682.6 514 66.3
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 3.2e-194 682.2 516 66.7
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 3.2e-194 682.2 514 66.0
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 3.2e-194 682.2 514 66.7
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 3.2e-194 682.2 514 66.3
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 4.1e-194 681.8 514 66.5
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 4.1e-194 681.8 514 66.5
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 4.1e-194 681.8 514 66.5
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 4.1e-194 681.8 516 66.5
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 4.1e-194 681.8 514 67.1
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 1.2e-193 680.2 514 66.3
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 1.2e-193 680.2 514 66.5
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 1.6e-193 679.9 514 66.0
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 1.6e-193 679.9 514 67.3
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 2.0e-193 679.5 514 66.0
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 2.7e-193 679.1 514 65.8
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 2.7e-193 679.1 514 66.5
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 2.7e-193 679.1 514 66.3
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 3.5e-193 678.7 514 66.0
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.6e-193 678.3 518 66.0
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 4.6e-193 678.3 514 65.8
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 6.0e-193 677.9 514 66.3
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 6.0e-193 677.9 514 66.3
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 6.0e-193 677.9 514 66.3
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 7.8e-193 677.6 514 66.3
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 7.8e-193 677.6 514 66.0
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 7.8e-193 677.6 514 65.6
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 1.0e-192 677.2 514 66.9
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 1.0e-192 677.2 514 65.8
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 1.7e-192 676.4 516 66.3
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 3.0e-192 675.6 514 66.3
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 3.0e-192 675.6 514 66.5
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 3.9e-192 675.2 514 65.6
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 3.9e-192 675.2 514 67.3
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 5.0e-192 674.9 514 66.5
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 6.6e-192 674.5 514 65.8
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 6.6e-192 674.5 514 66.3
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 6.6e-192 674.5 514 66.1
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 1.5e-191 673.3 516 65.7
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 1.5e-191 673.3 514 65.6
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 1.5e-191 673.3 514 66.0
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 1.9e-191 672.9 514 65.8
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 1.9e-191 672.9 514 66.0
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.5e-191 672.5 514 66.1
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.5e-191 672.5 514 66.1
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 2.5e-191 672.5 514 66.0
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 4.3e-191 671.8 514 65.0
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 4.3e-191 671.8 514 66.0
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 4.3e-191 671.8 514 65.4
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 4.3e-191 671.8 514 65.6
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 5.6e-191 671.4 514 64.6
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.2e-190 670.2 514 66.0
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.2e-190 670.2 508 66.5
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 2.1e-190 669.5 514 66.0
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 2.1e-190 669.5 514 65.6
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 2.1e-190 669.5 514 65.4
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 3.6e-190 668.7 514 65.8
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.6e-190 668.7 514 65.8
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.6e-190 668.7 514 65.8
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 4.7e-190 668.3 514 66.0
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 4.7e-190 668.3 514 66.1
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 4.7e-190 668.3 514 65.6
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 1.1e-189 667.2 514 64.6
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 1.1e-189 667.2 514 64.6
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.1e-189 667.2 514 66.0
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 1.4e-189 666.8 514 65.2
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 1.4e-189 666.8 516 65.3
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.4e-189 666.8 514 65.8
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 1.8e-189 666.4 514 64.2
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 2.3e-189 666.0 514 66.1
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 3.1e-189 665.6 514 65.2
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 5.2e-189 664.8 514 64.6
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 6.8e-189 664.5 514 64.4
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 6.8e-189 664.5 514 64.4
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 6.8e-189 664.5 516 65.5
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 1.2e-188 663.7 514 64.2
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 1.5e-188 663.3 514 64.2
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 1.5e-188 663.3 514 64.4
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 2.6e-188 662.5 514 64.6
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 3.4e-188 662.1 514 64.0
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 7.5e-188 661.0 514 63.8
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 7.5e-188 661.0 534 63.9
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.3e-187 660.2 514 63.6
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 1.3e-187 660.2 514 64.4
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 2.2e-187 659.4 514 64.2
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 3.7e-187 658.7 501 65.5
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 8.3e-187 657.5 514 63.4
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.1e-186 657.1 515 64.9
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.1e-186 657.1 514 64.0
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 3.2e-186 655.6 516 65.3
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 4.1e-186 655.2 514 64.6
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 4.1e-186 655.2 516 64.9
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 7.0e-186 654.4 514 64.4
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 7.0e-186 654.4 514 64.6
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 9.2e-186 654.1 512 65.0
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 9.2e-186 654.1 514 62.5
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 1.2e-185 653.7 553 61.1
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 2.7e-185 652.5 516 64.9
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 7.8e-185 651.0 514 64.4
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 6.6e-184 647.9 501 64.5
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.1e-183 647.1 514 63.0
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 3.3e-183 645.6 514 62.3
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 5.6e-183 644.8 514 63.2
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 5.6e-183 644.8 514 63.2
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 7.3e-183 644.4 514 63.2
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 1.6e-182 643.3 501 64.5
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 1.6e-182 643.3 514 63.0
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 4.7e-182 641.7 501 64.5
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 6.2e-182 641.3 528 62.5
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 1.5e-180 636.7 494 65.6
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 9.9e-180 634.0 514 61.5
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 1.4e-178 630.2 501 64.7
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 1.9e-178 629.8 515 62.7
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 3.2e-178 629.0 565 59.6
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 7.8e-177 624.4 479 65.6
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.3e-175 619.0 499 62.1
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 5.6e-175 618.2 551 59.7
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 1.6e-174 616.7 512 60.9
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 6.2e-174 614.8 514 61.7
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 2.0e-172 609.8 505 61.4
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 4.9e-171 605.1 513 61.8
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 9.2e-170 600.9 531 59.9
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 9.2e-170 600.9 531 59.9
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 3.5e-169 599.0 514 60.7
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.1e-165 587.4 514 59.5
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 3.2e-162 575.9 454 64.1
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 5.4e-154 548.5 479 61.2
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 8.1e-150 534.6 516 56.0
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.1e-149 532.7 516 56.2
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 1.2e-148 530.8 383 71.3
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 5.8e-148 528.5 420 63.3
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 3.2e-146 522.7 507 55.0
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 1.0e-136 491.1 382 63.1
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 2.0e-132 476.9 472 53.8
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 5.0e-131 472.2 383 62.1
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 9.7e-127 458.0 369 62.6
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 1.2e-124 451.1 368 64.7
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 2.0e-124 450.3 498 51.0
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.4e-120 437.6 352 63.1
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 1.1e-119 434.5 323 67.5
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 5.5e-114 415.6 528 43.0
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 2.1e-113 413.7 299 69.6
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 8.2e-110 401.7 386 55.7
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 1.0e-107 394.8 493 43.2
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.9e-107 393.3 281 69.8
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.2e-106 389.8 461 48.8
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 4.7e-97 359.4 509 38.5
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.0e-88 329.7 261 63.2
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 5.2e-88 329.3 282 62.4
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.4e-85 319.3 242 67.4
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.0e-76 290.8 343 48.4
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 8.3e-62 242.3 317 45.1
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 2.3e-59 234.2 364 41.5
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 9.9e-55 218.8 207 58.5
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.7e-52 210.7 206 56.3
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 6.0e-52 209.5 144 72.2
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.1e-49 201.1 196 55.6
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 1.7e-46 191.4 145 65.5
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 2.4e-40 171.0 117 66.7
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.7e-36 157.5 119 62.2
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 2.2e-30 137.9 106 65.1
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 3.8e-30 137.1 143 52.4
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 8.4e-22 109.4 87 66.7
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 7.2e-13 79.7 125 43.2
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 2.3e-11 74.7 121 42.1
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 1.7e-06 58.5 39 71.8


User provided reference genes

Program Settings