Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 8.6e-48 193.4 100 100.0
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 3.1e-29 131.7 88 72.7
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 4.9e-27 124.4 95 68.4
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 7.1e-26 120.6 93 65.6
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 3.5e-25 118.2 93 64.5
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 3.5e-25 118.2 93 64.5
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 6.0e-25 117.5 93 65.6
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 6.0e-25 117.5 93 63.4
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.0e-25 117.5 93 63.4
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.0e-25 117.5 93 63.4
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.0e-25 117.5 93 63.4
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 6.0e-25 117.5 93 63.4
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 6.0e-25 117.5 93 63.4
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.0e-24 116.7 85 67.1
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.3e-24 116.3 94 64.9
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.3e-24 116.3 94 62.8
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.3e-24 116.3 93 63.4
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.7e-24 115.9 93 63.4
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 1.7e-24 115.9 94 64.9
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 2.3e-24 115.5 93 64.5
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 2.3e-24 115.5 94 63.8
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 3.0e-24 115.2 92 65.2
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 3.0e-24 115.2 87 66.7
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 3.0e-24 115.2 89 62.9
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 3.9e-24 114.8 89 62.9
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 3.9e-24 114.8 89 62.9
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 5.1e-24 114.4 94 61.7
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 6.6e-24 114.0 92 63.0
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 6.6e-24 114.0 93 62.4
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 6.6e-24 114.0 93 63.4
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 6.6e-24 114.0 93 63.4
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 8.7e-24 113.6 93 63.4
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 8.7e-24 113.6 92 62.0
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.1e-23 113.2 93 62.4
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.1e-23 113.2 93 62.4
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.1e-23 113.2 87 63.2
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.1e-23 113.2 90 62.2
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.1e-23 113.2 93 62.4
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 1.5e-23 112.8 85 65.9
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.5e-23 112.8 93 60.2
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.9e-23 112.5 91 60.4
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.9e-23 112.5 87 64.4
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.9e-23 112.5 91 64.8
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.5e-23 112.1 92 62.0
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.5e-23 112.1 85 68.2
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 2.5e-23 112.1 89 62.9
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 2.5e-23 112.1 93 62.4
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 2.5e-23 112.1 93 60.2
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 2.5e-23 112.1 93 60.2
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 2.5e-23 112.1 93 60.2
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 2.5e-23 112.1 93 60.2
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.5e-23 112.1 87 64.4
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.5e-23 112.1 93 63.4
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.5e-23 112.1 91 61.5
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 3.3e-23 111.7 89 60.7
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 3.3e-23 111.7 92 60.9
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 3.3e-23 111.7 93 62.4
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 4.3e-23 111.3 94 60.6
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 4.3e-23 111.3 92 59.8
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 4.3e-23 111.3 89 60.7
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 4.3e-23 111.3 92 60.9
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 4.3e-23 111.3 87 63.2
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 4.3e-23 111.3 92 59.8
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 4.3e-23 111.3 89 61.8
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.3e-23 111.3 93 63.4
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 4.3e-23 111.3 92 62.0
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 4.3e-23 111.3 92 60.9
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 5.6e-23 110.9 92 62.0
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 5.6e-23 110.9 85 67.1
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 7.3e-23 110.5 92 60.9
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 7.3e-23 110.5 92 60.9
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 7.3e-23 110.5 92 60.9
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 7.3e-23 110.5 85 64.7
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 7.3e-23 110.5 98 59.2
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 7.3e-23 110.5 85 63.5
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 9.6e-23 110.2 86 60.5
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 9.6e-23 110.2 85 64.7
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 9.6e-23 110.2 90 62.2
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.3e-22 109.8 92 59.8
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.3e-22 109.8 96 60.4
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.3e-22 109.8 92 56.5
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.3e-22 109.8 89 64.0
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.3e-22 109.8 93 60.2
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.6e-22 109.4 85 63.5
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.6e-22 109.4 85 63.5
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 1.6e-22 109.4 93 61.3
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.1e-22 109.0 93 60.2
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 2.1e-22 109.0 85 63.5
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 2.1e-22 109.0 96 61.5
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 2.1e-22 109.0 92 59.8
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 2.1e-22 109.0 92 59.8
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.1e-22 109.0 92 59.8
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 2.1e-22 109.0 87 63.2
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 2.8e-22 108.6 91 62.6
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 3.6e-22 108.2 92 59.8
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.6e-22 108.2 85 62.4
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 3.6e-22 108.2 92 59.8
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 3.6e-22 108.2 85 62.4
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 4.8e-22 107.8 91 59.3
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 4.8e-22 107.8 91 60.4
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.8e-22 107.8 85 62.4
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 4.8e-22 107.8 87 64.4
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 6.2e-22 107.5 94 58.5
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 6.2e-22 107.5 87 62.1
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 8.1e-22 107.1 85 63.5
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 8.1e-22 107.1 92 58.7
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.1e-21 106.7 93 59.1
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.1e-21 106.7 93 59.1
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.8e-21 105.9 91 60.4
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 1.8e-21 105.9 89 61.8
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.8e-21 105.9 89 61.8
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 2.4e-21 105.5 84 61.9
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 3.1e-21 105.1 89 61.8
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 3.1e-21 105.1 85 62.4
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 3.1e-21 105.1 87 62.1
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 4.0e-21 104.8 93 60.2
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 5.3e-21 104.4 93 59.1
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 5.3e-21 104.4 93 59.1
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 5.3e-21 104.4 93 59.1
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 5.3e-21 104.4 93 59.1
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 5.3e-21 104.4 91 59.3
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 5.3e-21 104.4 87 59.8
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 6.9e-21 104.0 84 63.1
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 6.9e-21 104.0 85 63.5
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 6.9e-21 104.0 85 63.5
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 6.9e-21 104.0 85 63.5
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 9.0e-21 103.6 93 58.1
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 1.2e-20 103.2 93 59.1
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 1.2e-20 103.2 96 58.3
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 1.2e-20 103.2 89 59.6
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.2e-20 103.2 88 59.1
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.5e-20 102.8 85 61.2
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.5e-20 102.8 89 59.6
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 2.6e-20 102.1 94 57.4
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 2.6e-20 102.1 94 57.4
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 7.6e-20 100.5 91 56.0
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.7e-19 99.4 90 57.8
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 7.1e-18 94.0 79 59.5
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 2.1e-17 92.4 84 58.3
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.0e-16 90.1 93 53.8
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.3e-16 89.7 82 58.5
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 3.9e-16 88.2 82 57.3
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 9.6e-15 83.6 65 63.1
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 2.8e-14 82.0 90 48.9
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 4.0e-13 78.2 82 54.9
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.2e-12 76.6 97 45.4
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-12 76.3 82 53.7
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.5e-12 76.3 89 49.4
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.1e-10 70.1 93 44.1
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.1e-10 70.1 55 63.6
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 1.4e-10 69.7 55 61.8
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 2.1e-09 65.9 55 58.2
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.1e-09 65.9 53 58.5
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 2.7e-09 65.5 53 60.4
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 6.7e-08 60.8 52 57.7
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.1e-07 60.1 88 38.6
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.1e-07 60.1 62 56.5
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.5e-07 59.7 74 48.6
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 6.2e-06 54.3 45 60.0


User provided reference genes

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