Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 3.2e-125 451.8 236 100.0
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.9e-93 346.3 328 63.1
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 3.1e-11 73.2 84 44.0
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.1e-11 73.2 79 46.8
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 4.0e-11 72.8 92 47.8
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 4.0e-11 72.8 106 41.5
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.0e-11 72.8 77 46.8
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 6.8e-11 72.0 90 41.1
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 6.8e-11 72.0 75 49.3
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 6.8e-11 72.0 79 45.6
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 8.9e-11 71.6 87 46.0
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 8.9e-11 71.6 92 44.6
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 1.5e-10 70.9 91 47.3
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 1.5e-10 70.9 84 42.9
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 2.0e-10 70.5 91 42.9
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 2.0e-10 70.5 79 44.3
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 2.6e-10 70.1 107 42.1
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 2.6e-10 70.1 87 43.7
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 3.4e-10 69.7 80 47.5
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.4e-10 69.7 86 41.9
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 5.8e-10 68.9 103 40.8
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 5.8e-10 68.9 122 36.1
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 5.8e-10 68.9 83 48.2
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 7.6e-10 68.6 79 44.3
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 7.6e-10 68.6 113 39.8
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 9.9e-10 68.2 104 39.4
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.3e-09 67.8 114 35.1
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.7e-09 67.4 103 44.7
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.7e-09 67.4 78 47.4
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 2.2e-09 67.0 80 42.5
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 2.2e-09 67.0 82 41.5
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 2.2e-09 67.0 76 43.4
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 2.9e-09 66.6 85 43.5
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 2.9e-09 66.6 79 43.0
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 2.9e-09 66.6 79 43.0
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 3.7e-09 66.2 78 43.6
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 3.7e-09 66.2 78 43.6
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 4.9e-09 65.9 108 35.2
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 4.9e-09 65.9 106 38.7
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 4.9e-09 65.9 74 43.2
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 4.9e-09 65.9 90 37.8
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 6.4e-09 65.5 65 49.2
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 6.4e-09 65.5 103 37.9
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.1e-08 64.7 104 37.5
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.1e-08 64.7 76 44.7
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.4e-08 64.3 86 41.9
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 1.4e-08 64.3 88 36.4
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.4e-08 64.3 105 38.1
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.4e-08 64.3 82 40.2
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.9e-08 63.9 124 33.1
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 2.4e-08 63.5 98 41.8
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 3.2e-08 63.2 106 36.8
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 3.2e-08 63.2 108 40.7
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 4.1e-08 62.8 89 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 4.1e-08 62.8 69 46.4
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 5.4e-08 62.4 103 36.9
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 5.4e-08 62.4 89 42.7
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 7.1e-08 62.0 72 43.1
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 7.1e-08 62.0 81 43.2
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 9.2e-08 61.6 91 42.9
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 9.2e-08 61.6 73 45.2
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 9.2e-08 61.6 73 45.2
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 9.2e-08 61.6 113 37.2
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 9.2e-08 61.6 111 38.7
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.2e-08 61.6 88 36.4
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 1.2e-07 61.2 82 42.7
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.2e-07 61.2 113 38.1
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.2e-07 61.2 109 33.0
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.2e-07 61.2 84 41.7
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 1.6e-07 60.8 88 40.9
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.6e-07 60.8 88 35.2
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.6e-07 60.8 98 40.8
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.1e-07 60.5 87 41.4
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 2.1e-07 60.5 88 35.2
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.1e-07 60.5 88 35.2
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.7e-07 60.1 80 43.8
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 2.7e-07 60.1 98 35.7
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 2.7e-07 60.1 141 32.6
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 3.5e-07 59.7 106 34.9
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 3.5e-07 59.7 109 34.9
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 3.5e-07 59.7 116 32.8
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 4.6e-07 59.3 104 38.5
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.6e-07 59.3 78 38.5
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 4.6e-07 59.3 80 41.2
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 4.6e-07 59.3 70 42.9
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 6.0e-07 58.9 83 38.6
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 6.0e-07 58.9 67 46.3
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 7.8e-07 58.5 89 39.3
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 7.8e-07 58.5 102 39.2
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.0e-06 58.2 100 38.0
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.0e-06 58.2 110 35.5
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.0e-06 58.2 94 40.4
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.0e-06 58.2 87 41.4
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-06 57.8 88 35.2
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-06 57.8 166 28.3
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 2.3e-06 57.0 176 33.0
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.3e-06 57.0 137 31.4
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 2.3e-06 57.0 141 31.9
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 3.0e-06 56.6 81 37.0
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 3.0e-06 56.6 105 37.1
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.1e-06 55.8 147 29.3
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 5.1e-06 55.8 80 41.2
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.6e-06 55.5 128 30.5
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 6.6e-06 55.5 86 38.4
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 6.6e-06 55.5 103 34.0
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 6.6e-06 55.5 97 32.0
SMO367G0349 Selaginella moellendorffii HOM05D004296 ORTHO05D377430 6.6e-06 55.5 147 32.7
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 8.6e-06 55.1 66 47.0
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 8.6e-06 55.1 183 30.6


User provided reference genes

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