Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 9.4e-63 243.4 129 100.0
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.1e-47 193.4 116 90.5
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.3e-32 143.3 105 69.5
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 6.5e-32 141.0 121 62.0
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 9.5e-31 137.1 91 86.8
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 7.5e-28 127.5 98 65.3
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 8.3e-27 124.0 111 59.5
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 8.3e-27 124.0 111 59.5
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.8e-26 122.9 121 56.2
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.4e-26 122.5 118 55.9
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 3.1e-26 122.1 120 58.3
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.4e-26 121.3 119 55.5
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 7.0e-26 120.9 102 63.7
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.2e-25 120.2 111 55.9
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 1.2e-25 120.2 105 61.9
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.2e-25 120.2 105 61.9
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.6e-25 119.8 111 59.5
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.6e-25 119.8 111 59.5
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.6e-25 119.8 111 59.5
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.0e-25 119.4 121 54.5
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 3.5e-25 118.6 111 59.5
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.5e-25 118.6 111 59.5
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 4.5e-25 118.2 97 60.8
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 4.5e-25 118.2 119 56.3
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 4.5e-25 118.2 105 61.0
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 5.9e-25 117.9 119 56.3
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 5.9e-25 117.9 110 58.2
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 5.9e-25 117.9 110 58.2
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 5.9e-25 117.9 110 58.2
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 7.8e-25 117.5 121 52.9
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 7.8e-25 117.5 109 58.7
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.0e-24 117.1 112 58.9
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.0e-24 117.1 112 58.9
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 1.0e-24 117.1 122 55.7
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.3e-24 116.7 105 59.0
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 2.3e-24 115.9 121 54.5
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.8e-24 115.2 109 56.9
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 3.8e-24 115.2 120 51.7
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 5.0e-24 114.8 122 54.9
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 5.0e-24 114.8 121 55.4
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 5.0e-24 114.8 121 52.9
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 5.0e-24 114.8 105 60.0
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 8.6e-24 114.0 100 60.0
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 8.6e-24 114.0 120 52.5
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 1.1e-23 113.6 119 54.6
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.5e-23 113.2 119 53.8
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.5e-23 113.2 121 53.7
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.9e-23 112.8 117 53.8
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.9e-23 112.8 108 55.6
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.9e-23 112.8 122 50.8
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.5e-23 112.5 119 54.6
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 2.5e-23 112.5 121 53.7
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 2.5e-23 112.5 115 52.2
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 2.5e-23 112.5 101 58.4
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.3e-23 112.1 107 54.2
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 3.3e-23 112.1 103 59.2
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 4.3e-23 111.7 121 53.7
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 4.3e-23 111.7 112 54.5
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 5.6e-23 111.3 121 54.5
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 5.6e-23 111.3 119 50.4
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 7.3e-23 110.9 105 54.3
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 7.3e-23 110.9 120 52.5
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.2e-22 110.2 121 52.9
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.2e-22 110.2 105 57.1
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.2e-22 110.2 105 57.1
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.6e-22 109.8 122 54.1
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.6e-22 109.8 113 54.0
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.6e-22 109.8 117 53.8
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 2.1e-22 109.4 124 55.6
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 2.1e-22 109.4 121 51.2
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.1e-22 109.4 104 56.7
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.8e-22 109.0 102 56.9
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.8e-22 109.0 102 56.9
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.8e-22 109.0 116 50.0
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 2.8e-22 109.0 99 57.6
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.6e-22 108.6 116 50.9
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 3.6e-22 108.6 134 50.0
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 3.6e-22 108.6 121 53.7
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 4.7e-22 108.2 110 52.7
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 4.7e-22 108.2 101 59.4
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 4.7e-22 108.2 118 49.2
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 4.7e-22 108.2 119 52.9
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 4.7e-22 108.2 123 51.2
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 6.1e-22 107.8 100 59.0
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 6.1e-22 107.8 120 53.3
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 8.0e-22 107.5 120 50.8
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 8.0e-22 107.5 136 49.3
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 8.0e-22 107.5 101 59.4
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.0e-21 107.1 136 50.0
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.0e-21 107.1 136 50.0
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.0e-21 107.1 136 50.0
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 1.0e-21 107.1 124 51.6
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.4e-21 106.7 101 58.4
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.4e-21 106.7 118 50.8
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.8e-21 106.3 135 48.9
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.8e-21 106.3 120 52.5
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.8e-21 106.3 120 52.5
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.8e-21 106.3 117 49.6
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 3.0e-21 105.5 136 50.0
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.0e-21 105.1 105 57.1
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.2e-21 104.8 105 57.1
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.2e-21 104.8 105 56.2
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 5.2e-21 104.8 120 50.8
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 8.9e-21 104.0 122 50.8
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.2e-20 103.6 124 48.4
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.5e-20 103.2 124 50.8
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.5e-20 103.2 120 53.3
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.0e-20 102.8 113 50.4
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 2.0e-20 102.8 121 52.1
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 2.0e-20 102.8 96 59.4
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 4.4e-20 101.7 80 67.5
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 4.4e-20 101.7 101 57.4
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 5.7e-20 101.3 105 55.2
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.5e-20 100.9 105 55.2
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 9.8e-20 100.5 110 53.6
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 9.8e-20 100.5 89 58.4
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 9.8e-20 100.5 107 49.5
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 6.4e-19 97.8 128 45.3
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.8e-18 96.3 107 54.2
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 5.4e-18 94.7 110 52.7
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.2e-17 93.6 107 49.5
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 2.0e-17 92.8 109 52.3
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 4.6e-17 91.7 97 53.6
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 4.6e-17 91.7 92 56.5
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.7e-16 89.7 111 50.5
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.3e-16 89.4 101 50.5
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 2.3e-16 89.4 106 51.9
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 5.0e-16 88.2 112 50.0
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 6.6e-16 87.8 111 50.5
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.1e-15 87.0 109 45.9
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 1.1e-15 87.0 109 50.5
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.5e-15 86.7 111 48.6
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.3e-15 85.5 109 47.7
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 4.3e-15 85.1 110 49.1
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 9.5e-15 84.0 126 45.2
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.4e-13 80.1 94 48.9
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.4e-13 80.1 94 48.9
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.3e-13 79.3 102 46.1
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 6.4e-11 71.2 100 46.0
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.1e-10 70.5 106 41.5
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 2.4e-10 69.3 67 52.2
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 4.1e-10 68.6 105 44.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 5.4e-10 68.2 101 42.6
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 5.4e-10 68.2 52 63.5
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 7.0e-10 67.8 95 46.3
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.2e-09 67.0 98 43.9
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.7e-08 63.2 91 41.8
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 2.3e-08 62.8 75 50.7
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 3.0e-08 62.4 111 35.1
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 8.6e-08 60.8 90 41.1
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-07 60.5 85 48.2
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 2.8e-06 55.8 64 45.3
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 3.6e-06 55.5 70 42.9
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 3.6e-06 55.5 68 44.1


User provided reference genes

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