Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.0e-98 362.5 188 100.0
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 6.5e-65 251.1 174 73.0
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 6.5e-65 251.1 175 70.9
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 1.1e-64 250.4 168 73.8
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.5e-64 249.2 174 72.4
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.5e-64 249.2 174 72.4
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 3.2e-64 248.8 168 73.8
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 4.2e-64 248.4 176 72.7
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 4.2e-64 248.4 168 70.8
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 5.5e-64 248.1 168 71.4
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 5.5e-64 248.1 168 71.4
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 9.5e-64 247.3 173 70.5
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 9.5e-64 247.3 179 69.3
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 1.2e-63 246.9 168 70.8
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.2e-63 246.9 168 70.8
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.2e-63 246.9 168 70.8
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.2e-63 246.9 170 71.2
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.2e-63 246.9 172 71.5
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.2e-63 246.9 176 72.2
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.6e-63 246.5 175 70.9
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 2.1e-63 246.1 168 71.4
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 2.1e-63 246.1 168 71.4
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 2.1e-63 246.1 168 71.4
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 2.1e-63 246.1 168 71.4
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.1e-63 246.1 179 69.3
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 2.1e-63 246.1 174 70.1
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 2.1e-63 246.1 187 65.8
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 2.8e-63 245.7 170 71.2
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.8e-63 245.7 170 71.8
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.8e-63 245.7 178 68.5
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 3.6e-63 245.4 168 72.0
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.6e-63 245.4 168 70.8
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.6e-63 245.4 168 70.8
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 3.6e-63 245.4 178 70.8
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 4.7e-63 245.0 168 71.4
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 4.7e-63 245.0 168 72.0
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 4.7e-63 245.0 178 69.7
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 8.0e-63 244.2 168 71.4
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 8.0e-63 244.2 174 70.1
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 8.0e-63 244.2 168 70.8
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.4e-62 243.4 170 71.2
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 1.4e-62 243.4 170 71.2
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.8e-62 243.0 168 70.8
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 2.3e-62 242.7 168 70.8
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-62 242.7 169 71.0
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.3e-62 242.7 183 65.6
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.3e-62 242.7 186 64.5
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 2.3e-62 242.7 176 67.6
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 2.3e-62 242.7 173 72.3
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 3.0e-62 242.3 174 70.1
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 3.0e-62 242.3 167 71.9
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 4.0e-62 241.9 168 70.8
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 4.0e-62 241.9 168 72.0
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 5.2e-62 241.5 168 70.8
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 5.2e-62 241.5 168 71.4
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 6.8e-62 241.1 174 69.5
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 6.8e-62 241.1 178 66.3
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 6.8e-62 241.1 184 66.3
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 8.8e-62 240.7 168 69.0
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 8.8e-62 240.7 178 66.3
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 8.8e-62 240.7 171 70.8
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.2e-61 240.4 171 69.0
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.2e-61 240.4 171 70.8
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.2e-61 240.4 184 67.9
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 1.5e-61 240.0 178 67.4
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.5e-61 240.0 171 70.8
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 1.5e-61 240.0 168 72.0
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.0e-61 239.6 171 70.2
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.0e-61 239.6 184 67.4
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 2.0e-61 239.6 179 64.8
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 2.0e-61 239.6 170 71.2
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.6e-61 239.2 179 68.2
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 2.6e-61 239.2 179 65.4
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 2.6e-61 239.2 171 69.0
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 3.4e-61 238.8 171 69.6
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 4.4e-61 238.4 168 70.2
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 7.5e-61 237.7 172 68.6
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 9.8e-61 237.3 172 68.0
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 9.8e-61 237.3 171 70.8
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.3e-60 236.9 177 67.2
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.3e-60 236.9 177 67.2
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 2.2e-60 236.1 168 70.2
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.2e-60 236.1 184 66.8
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 2.8e-60 235.7 178 68.0
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 3.7e-60 235.3 171 68.4
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 4.9e-60 235.0 171 66.7
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 4.9e-60 235.0 180 65.6
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 4.9e-60 235.0 199 60.8
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 6.3e-60 234.6 168 68.5
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.1e-59 233.8 171 67.8
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.4e-59 233.4 179 67.0
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 1.4e-59 233.4 171 67.3
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.8e-59 233.0 177 67.8
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.4e-59 232.6 169 68.6
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.4e-59 232.6 194 63.4
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.4e-59 232.6 178 66.9
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 5.4e-59 231.5 175 65.1
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 5.4e-59 231.5 170 68.8
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 5.4e-59 231.5 178 66.3
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 7.0e-59 231.1 175 65.7
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 9.2e-59 230.7 183 66.1
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 1.6e-58 229.9 171 67.3
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.6e-58 229.9 213 58.2
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.6e-58 229.9 177 68.4
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.7e-58 229.2 195 63.6
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 2.7e-58 229.2 172 66.3
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.7e-58 229.2 168 68.5
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 1.0e-57 227.3 168 67.3
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.3e-57 226.9 181 64.6
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.5e-56 223.4 155 72.3
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.3e-56 222.2 212 55.2
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 5.6e-56 221.5 168 67.3
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 4.7e-55 218.4 228 51.8
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 8.0e-55 217.6 227 51.5
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.3e-54 216.1 221 52.5
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 3.0e-54 215.7 160 66.2
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 2.6e-53 212.6 163 67.5
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 5.4e-51 204.9 170 62.4
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 6.6e-49 198.0 174 60.3
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 4.3e-48 195.3 142 69.0
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 2.1e-47 193.0 132 72.0
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 3.1e-46 189.1 124 74.2
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 3.1e-46 189.1 124 74.2
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-45 187.2 169 60.9
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.5e-45 186.8 124 72.6
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 3.5e-42 175.6 124 70.2
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-40 170.6 127 66.1
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 9.5e-40 167.5 123 66.7
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 2.8e-39 166.0 129 65.1
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.1e-38 162.5 112 73.2
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 6.8e-38 161.4 122 63.9
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.2e-37 160.6 110 70.9
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.3e-33 147.1 192 47.4
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 8.6e-33 144.4 118 63.6
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-32 143.7 108 66.7
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.3e-32 142.5 102 66.7
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 5.6e-32 141.7 172 41.9
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 2.1e-31 139.8 179 43.0
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 2.4e-30 136.3 106 64.2
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 2.9e-28 129.4 107 63.6
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 1.1e-27 127.5 162 39.5
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 2.4e-27 126.3 91 67.0
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.5e-26 122.5 91 63.7
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.0e-25 120.9 88 69.3
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 8.6e-25 117.9 161 39.1
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.3e-24 115.9 82 67.1
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 3.3e-24 115.9 79 72.2
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 4.3e-24 115.5 85 68.2
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 4.7e-23 112.1 110 58.2
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 9.9e-21 104.4 75 66.7
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.9e-19 100.1 101 53.5
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.3e-19 97.8 90 55.6
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.6e-13 79.7 57 64.9
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.6e-10 70.5 56 62.5
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-09 66.6 50 62.0
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 4.8e-07 58.9 114 36.8
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.2e-07 58.5 114 36.8
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.2e-07 58.5 114 36.8
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.4e-06 56.6 114 36.0
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.1e-06 56.2 114 36.0


User provided reference genes

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