Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 5.6e-264 913.7 446 100.0
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 5.5e-195 684.5 428 77.3
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 1.0e-188 663.7 425 73.9
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 3.8e-188 661.8 431 73.8
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 8.5e-188 660.6 422 73.9
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 1.4e-187 659.8 421 73.6
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 1.4e-187 659.8 437 72.5
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 2.7e-186 655.6 421 73.9
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 2.7e-186 655.6 421 73.9
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 3.6e-186 655.2 425 73.4
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 3.6e-186 655.2 421 73.6
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 6.1e-186 654.4 424 73.3
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 1.0e-185 653.7 421 73.4
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 1.8e-185 652.9 421 73.6
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 2.3e-185 652.5 421 74.3
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 3.9e-185 651.7 421 72.4
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 3.9e-185 651.7 431 71.9
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 6.7e-185 651.0 421 73.9
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 1.1e-184 650.2 432 72.2
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 1.1e-184 650.2 421 72.7
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 1.1e-184 650.2 436 71.1
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 1.5e-184 649.8 424 73.1
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 1.5e-184 649.8 422 72.0
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 1.5e-184 649.8 422 73.5
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 2.0e-184 649.4 421 74.1
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 2.0e-184 649.4 421 72.9
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 3.3e-184 648.7 432 71.3
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 3.3e-184 648.7 431 71.7
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 4.4e-184 648.3 423 71.4
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 4.4e-184 648.3 423 73.0
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 5.7e-184 647.9 442 71.0
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 9.7e-184 647.1 440 70.5
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 1.7e-183 646.4 422 72.7
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 2.2e-183 646.0 421 73.9
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 2.2e-183 646.0 436 71.1
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 2.8e-183 645.6 422 73.7
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 3.7e-183 645.2 461 68.1
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 3.7e-183 645.2 430 71.2
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 4.8e-183 644.8 424 72.6
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 6.3e-183 644.4 429 71.6
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 6.3e-183 644.4 421 72.9
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-182 643.7 424 72.2
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.4e-182 643.3 429 71.6
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 1.8e-182 642.9 424 72.2
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 2.4e-182 642.5 422 72.3
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 3.1e-182 642.1 422 71.8
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 3.1e-182 642.1 422 72.5
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 4.1e-182 641.7 428 71.7
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 5.3e-182 641.3 424 71.5
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 7.0e-182 641.0 429 72.3
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 7.0e-182 641.0 414 73.7
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 2.0e-181 639.4 423 71.9
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 2.0e-181 639.4 422 72.3
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 2.0e-181 639.4 413 74.8
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 2.6e-181 639.0 423 72.1
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 2.6e-181 639.0 420 72.6
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 3.5e-181 638.6 421 72.4
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 3.5e-181 638.6 421 72.2
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 4.5e-181 638.3 431 71.7
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 4.5e-181 638.3 421 72.0
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 4.5e-181 638.3 421 73.4
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 5.9e-181 637.9 431 71.5
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 5.9e-181 637.9 428 71.7
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 7.7e-181 637.5 442 69.7
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 1.7e-180 636.3 429 71.8
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 1.1e-179 633.6 431 69.1
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 1.5e-179 633.3 424 71.7
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 4.2e-179 631.7 423 72.3
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 7.2e-179 630.9 420 72.9
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 9.4e-179 630.6 426 71.4
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 6.1e-178 627.9 425 70.8
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 1.5e-176 623.2 417 72.2
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 2.0e-176 622.9 422 69.9
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 3.3e-176 622.1 498 63.5
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 1.3e-175 620.2 424 71.0
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 1.3e-175 620.2 424 71.0
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 1.3e-175 620.2 424 71.2
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 2.8e-175 619.0 424 71.0
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 3.7e-175 618.6 421 70.3
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 6.3e-175 617.8 421 70.3
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 8.2e-175 617.5 421 70.1
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 3.5e-173 612.1 421 70.5
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 2.2e-172 609.4 479 64.3
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 5.5e-171 604.7 431 68.9
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 2.1e-170 602.8 420 69.0
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 1.0e-169 600.5 438 66.0
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.8e-169 599.7 382 75.7
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 4.0e-169 598.6 423 69.5
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 7.5e-168 594.3 421 68.4
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 1.3e-167 593.6 406 70.2
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 2.4e-166 589.3 391 72.1
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 2.4e-166 589.3 381 74.5
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 4.5e-165 585.1 383 72.8
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 2.3e-164 582.8 456 64.3
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 6.6e-164 581.3 389 71.2
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 9.5e-163 577.4 426 66.7
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 1.0e-161 573.9 423 66.9
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.2e-161 571.6 425 65.2
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.2e-161 571.6 425 65.2
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 6.8e-161 571.2 421 66.0
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 4.9e-159 565.1 380 71.6
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 1.4e-158 563.5 362 75.1
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 8.6e-156 554.3 423 64.3
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 5.6e-155 551.6 423 63.8
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 5.6e-155 551.6 428 66.4
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 1.2e-154 550.4 352 75.9
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 9.8e-152 540.8 373 70.8
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.3e-151 540.4 450 60.4
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 2.4e-150 536.2 411 63.5
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 2.5e-147 526.2 349 73.6
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 2.5e-147 526.2 419 62.3
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 8.0e-146 521.2 334 76.3
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 6.8e-145 518.1 429 59.7
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 3.4e-144 515.8 356 70.5
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 1.7e-143 513.5 315 77.5
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 3.7e-143 512.3 428 62.6
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 6.6e-132 474.9 440 55.2
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 3.3e-131 472.6 388 61.6
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 3.6e-130 469.2 455 52.7
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 4.2e-126 455.7 290 77.2
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 7.8e-125 451.4 316 70.3
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 3.9e-124 449.1 287 76.0
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 2.9e-119 433.0 482 48.5
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 4.0e-113 412.5 411 53.8
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 3.8e-111 406.0 252 77.0
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 2.9e-103 379.8 229 76.0
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 2.1e-101 373.6 225 78.2
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 2.3e-100 370.2 346 58.4
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 3.0e-100 369.8 271 70.5
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 1.5e-99 367.5 471 43.9
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 3.3e-99 366.3 226 75.7
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 1.8e-97 360.5 248 73.0
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 9.7e-91 338.2 269 66.2
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 3.7e-90 336.3 287 60.6
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 2.6e-80 303.5 182 77.5
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 2.6e-80 303.5 227 67.0
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 1.0e-79 301.6 185 76.2
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 4.2e-78 296.2 270 58.1
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 2.6e-75 287.0 213 67.1
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 1.4e-73 281.2 196 68.4
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 9.8e-59 231.9 206 59.2
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 1.2e-56 224.9 167 63.5
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.9e-54 217.6 269 48.3
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 2.0e-51 207.6 139 69.1
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 2.6e-43 180.6 208 48.6
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.2e-37 161.8 155 60.0
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 3.5e-32 143.7 146 50.0
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 3.9e-31 140.2 144 50.0
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 8.6e-31 139.0 120 55.0
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 4.7e-29 133.3 109 56.0
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 4.0e-28 130.2 131 54.2
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.2e-21 108.6 81 55.6
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 1.6e-21 108.2 76 64.5
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 6.2e-21 106.3 135 44.4
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 1.2e-19 102.1 80 55.0
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 4.1e-17 93.6 67 58.2
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 1.2e-16 92.0 75 61.3
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 7.8e-16 89.4 56 67.9
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 1.1e-14 85.5 100 48.0
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 6.2e-13 79.7 61 70.5
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.8e-11 73.2 39 76.9
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 2.2e-10 71.2 309 25.6
Carub.0002s1993 Capsella rubella HOM05D002124 ORTHO05D004058 7.1e-09 66.2 312 24.4
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 4.6e-08 63.5 310 23.9
FAN16G0365 Fragaria x ananassa HOM05D002124 ORTHO05D004058 1.5e-06 58.5 405 22.7
FvH4_3g18700 Fragaria vesca HOM05D002124 ORTHO05D004058 5.6e-06 56.6 253 24.9
FAN11G1105 Fragaria x ananassa HOM05D002124 ORTHO05D004058 5.6e-06 56.6 253 24.9
FAN21G0287 Fragaria x ananassa HOM05D002124 ORTHO05D004058 7.3e-06 56.2 253 24.5
FAN25G2358 Fragaria x ananassa HOM05D002124 ORTHO05D004058 7.3e-06 56.2 253 24.5
Lsat_1_v5_gn_5_155081 Lactuca sativa HOM05D003378 ORTHO05D003942 7.3e-06 56.2 120 30.8


User provided reference genes

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