Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.0e-101 372.5 195 100.0
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 7.8e-53 211.1 143 69.9
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.8e-49 199.9 165 61.2
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 3.5e-45 185.7 185 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.7e-44 183.3 138 64.5
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 4.8e-26 122.1 151 49.7
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 6.2e-26 121.7 144 47.9
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 9.0e-25 117.9 126 49.2
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 3.4e-24 115.9 144 43.1
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 5.8e-24 115.2 133 47.4
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 9.9e-24 114.4 142 45.8
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 9.9e-24 114.4 133 47.4
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 9.9e-24 114.4 133 47.4
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.7e-23 113.6 131 45.8
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 3.8e-23 112.5 126 44.4
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 4.9e-23 112.1 138 45.7
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 6.4e-23 111.7 133 47.4
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.4e-23 111.3 136 40.4
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 8.4e-23 111.3 140 43.6
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 8.4e-23 111.3 126 48.4
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-22 110.9 126 45.2
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-22 110.9 126 47.6
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.1e-22 110.9 136 44.9
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.1e-22 110.9 133 43.6
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 1.4e-22 110.5 132 44.7
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.4e-22 110.5 138 44.9
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 1.4e-22 110.5 133 41.4
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.4e-22 110.5 137 44.5
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.9e-22 110.2 126 46.8
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.4e-22 109.8 135 42.2
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 2.4e-22 109.8 133 45.1
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.4e-22 109.8 125 46.4
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 2.4e-22 109.8 113 51.3
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 2.4e-22 109.8 134 46.3
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 2.4e-22 109.8 133 46.6
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 3.2e-22 109.4 137 41.6
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.2e-22 109.4 136 40.4
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 3.2e-22 109.4 135 42.2
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 3.2e-22 109.4 137 44.5
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 3.2e-22 109.4 126 43.7
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.2e-22 109.0 137 42.3
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 4.2e-22 109.0 137 42.3
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 4.2e-22 109.0 133 43.6
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 4.2e-22 109.0 133 45.1
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 4.2e-22 109.0 133 43.6
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 5.4e-22 108.6 133 42.1
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.4e-22 108.6 138 40.6
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.1e-22 108.2 132 41.7
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.1e-22 108.2 125 45.6
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 7.1e-22 108.2 125 45.6
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 7.1e-22 108.2 133 44.4
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 7.1e-22 108.2 133 44.4
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 9.3e-22 107.8 135 43.0
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 1.2e-21 107.5 126 42.9
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.2e-21 107.5 133 42.9
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.2e-21 107.5 130 42.3
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 1.6e-21 107.1 129 44.2
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.6e-21 107.1 132 40.9
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.6e-21 107.1 132 40.9
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.6e-21 107.1 139 44.6
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.6e-21 107.1 137 41.6
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 2.1e-21 106.7 143 42.0
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 2.1e-21 106.7 135 42.2
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 2.1e-21 106.7 133 44.4
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.7e-21 106.3 126 42.1
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 2.7e-21 106.3 137 40.1
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 2.7e-21 106.3 137 41.6
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 2.7e-21 106.3 139 41.7
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 2.7e-21 106.3 139 45.3
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 3.5e-21 105.9 137 41.6
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 3.5e-21 105.9 137 40.9
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 3.5e-21 105.9 137 40.9
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 3.5e-21 105.9 137 40.9
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 3.5e-21 105.9 137 40.9
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 3.5e-21 105.9 137 40.9
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 4.6e-21 105.5 134 44.0
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 4.6e-21 105.5 134 44.0
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.6e-21 105.5 138 39.9
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 6.0e-21 105.1 133 42.1
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 6.0e-21 105.1 131 42.7
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 7.9e-21 104.8 137 40.9
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 7.9e-21 104.8 133 42.9
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.0e-20 104.4 137 38.7
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.0e-20 104.4 133 42.1
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.0e-20 104.4 146 40.4
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.3e-20 104.0 133 42.9
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.3e-20 104.0 133 42.9
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.3e-20 104.0 133 43.6
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.3e-20 104.0 139 41.7
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 1.8e-20 103.6 138 39.9
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.8e-20 103.6 133 42.9
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.8e-20 103.6 128 42.2
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.8e-20 103.6 126 41.3
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 3.0e-20 102.8 133 43.6
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 3.9e-20 102.4 135 39.3
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 3.9e-20 102.4 116 44.0
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 3.9e-20 102.4 126 40.5
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 5.1e-20 102.1 125 43.2
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 5.1e-20 102.1 125 43.2
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 5.1e-20 102.1 135 38.5
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 5.1e-20 102.1 119 45.4
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.1e-20 102.1 129 43.4
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.1e-20 102.1 129 43.4
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 6.7e-20 101.7 135 40.0
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.7e-20 101.7 126 44.4
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 6.7e-20 101.7 137 39.4
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 1.1e-19 100.9 133 42.1
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.1e-19 100.9 118 45.8
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-19 100.5 125 42.4
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.5e-19 100.5 133 42.9
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.5e-19 100.5 185 36.2
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.5e-19 100.5 111 42.3
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.5e-19 100.5 125 41.6
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 2.5e-19 99.8 142 39.4
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.5e-19 99.8 132 43.2
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 2.5e-19 99.8 133 38.3
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.3e-19 99.4 130 42.3
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 4.3e-19 99.0 139 38.8
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 5.6e-19 98.6 112 45.5
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 5.6e-19 98.6 112 45.5
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 5.6e-19 98.6 125 40.8
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 5.6e-19 98.6 128 41.4
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.4e-19 98.2 123 42.3
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 7.4e-19 98.2 132 38.6
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 9.6e-19 97.8 125 40.8
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.3e-18 97.4 133 37.6
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 1.3e-18 97.4 133 39.1
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.3e-18 97.4 127 40.9
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 2.1e-18 96.7 133 39.8
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 3.7e-18 95.9 133 40.6
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 4.8e-18 95.5 153 36.6
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 4.8e-18 95.5 132 38.6
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 6.2e-18 95.1 128 43.0
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 6.2e-18 95.1 108 43.5
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.1e-17 94.4 129 44.2
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.4e-17 94.0 116 41.4
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 1.8e-17 93.6 126 40.5
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 6.9e-17 91.7 126 39.7
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 9.0e-17 91.3 126 41.3
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.2e-16 90.9 154 35.1
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 2.0e-16 90.1 144 37.5
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 2.6e-16 89.7 147 37.4
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 2.6e-16 89.7 128 39.1
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.5e-16 89.0 134 37.3
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 1.9e-14 83.6 113 36.3
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.1e-13 80.1 93 43.0
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 1.8e-12 77.0 115 39.1
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.5e-11 73.9 106 37.7
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 7.4e-11 71.6 95 38.9
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 7.4e-11 71.6 112 37.5
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 2.8e-10 69.7 75 42.7
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 8.2e-10 68.2 78 39.7
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 6.9e-09 65.1 95 37.9
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 1.3e-07 60.8 133 30.8
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-06 57.8 57 45.6
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.1e-06 57.8 106 34.9


User provided reference genes

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