Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 9.4e-204 713.4 380 100.0
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 2.5e-87 326.6 229 69.0
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 4.4e-84 315.8 229 63.3
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 5.7e-84 315.5 229 63.3
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 7.5e-84 315.1 243 60.9
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 7.5e-84 315.1 244 60.2
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 7.5e-84 315.1 239 61.5
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 3.7e-83 312.8 229 63.8
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 8.2e-83 311.6 225 64.4
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.8e-82 310.5 235 61.3
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.4e-82 310.1 231 64.5
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 3.1e-82 309.7 229 62.0
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 4.1e-82 309.3 229 62.4
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 7.0e-82 308.5 226 62.8
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 9.1e-82 308.1 230 61.3
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 9.1e-82 308.1 247 58.3
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.2e-81 307.8 231 60.6
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.2e-81 307.8 230 61.3
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 2.7e-81 306.6 226 61.9
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 2.7e-81 306.6 229 62.9
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.7e-81 306.6 226 62.4
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 3.5e-81 306.2 231 61.0
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 4.5e-81 305.8 226 61.9
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 4.5e-81 305.8 220 65.0
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 5.9e-81 305.4 248 57.7
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 7.7e-81 305.1 232 60.3
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.0e-80 304.7 248 57.3
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 1.0e-80 304.7 226 62.4
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 1.3e-80 304.3 230 61.3
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.2e-80 303.5 220 63.6
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 2.9e-80 303.1 230 60.4
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 2.9e-80 303.1 229 61.6
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.9e-80 303.1 226 61.9
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 5.0e-80 302.4 226 62.4
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.0e-80 302.4 226 61.5
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 5.0e-80 302.4 226 62.4
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 6.5e-80 302.0 231 60.2
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 8.5e-80 301.6 232 59.9
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 1.1e-79 301.2 238 59.7
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.5e-79 300.8 229 62.0
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.9e-79 300.4 234 59.0
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 2.5e-79 300.1 228 61.4
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 2.5e-79 300.1 225 62.2
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 2.5e-79 300.1 225 62.2
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 3.2e-79 299.7 243 58.8
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 3.2e-79 299.7 226 61.9
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 4.2e-79 299.3 229 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 5.5e-79 298.9 230 61.3
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.5e-79 298.9 226 61.5
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 5.5e-79 298.9 220 62.3
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 7.2e-79 298.5 231 59.3
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 7.2e-79 298.5 226 60.6
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 9.4e-79 298.1 236 59.7
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.1e-78 297.0 243 57.6
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 2.1e-78 297.0 230 60.4
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 2.1e-78 297.0 226 60.2
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 2.1e-78 297.0 226 61.9
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.6e-78 296.2 229 61.1
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 3.6e-78 296.2 230 59.1
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 3.6e-78 296.2 248 56.9
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 4.7e-78 295.8 226 60.2
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 6.1e-78 295.4 242 59.1
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 8.0e-78 295.0 230 60.0
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 8.0e-78 295.0 230 58.7
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 8.0e-78 295.0 234 57.3
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.0e-77 294.7 230 59.6
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 1.0e-77 294.7 226 60.6
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.0e-77 294.7 226 60.2
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 1.4e-77 294.3 226 60.2
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 4.0e-77 292.7 223 61.4
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 6.8e-77 292.0 226 59.3
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 8.8e-77 291.6 220 61.8
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.5e-76 290.8 230 59.1
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.5e-76 290.8 239 58.6
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 2.6e-76 290.0 230 59.1
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 2.6e-76 290.0 248 57.3
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 2.6e-76 290.0 226 59.3
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 4.4e-76 289.3 230 57.8
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 4.4e-76 289.3 229 59.0
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 1.3e-75 287.7 230 60.4
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 1.7e-75 287.3 269 52.8
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 2.2e-75 287.0 252 54.8
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 2.4e-74 283.5 229 57.2
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 9.1e-74 281.6 219 58.9
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 3.5e-73 279.6 220 60.5
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 1.1e-71 274.6 248 53.6
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 3.3e-71 273.1 226 57.1
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 6.1e-70 268.9 201 60.2
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.8e-69 267.3 255 50.6
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 2.3e-69 266.9 223 56.1
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 5.2e-69 265.8 252 51.2
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 2.0e-68 263.8 217 57.6
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 2.6e-68 263.5 217 57.6
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 2.6e-68 263.5 229 53.3
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 1.3e-67 261.2 259 50.6
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.8e-67 260.0 243 53.5
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.8e-67 260.0 242 54.1
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 2.7e-65 253.4 183 63.4
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 5.9e-65 252.3 218 54.6
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 5.0e-64 249.2 182 62.6
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 5.6e-63 245.7 201 57.2
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.2e-62 244.6 183 62.8
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 8.0e-62 241.9 202 54.5
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.5e-60 237.7 250 49.2
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 2.6e-60 236.9 229 49.8
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 5.8e-60 235.7 229 51.5
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 7.5e-60 235.3 179 60.3
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 6.4e-59 232.3 183 59.6
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 1.4e-58 231.1 175 62.9
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.9e-58 230.7 220 52.3
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 2.0e-57 227.3 229 51.1
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 2.3e-56 223.8 228 50.4
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 3.1e-53 213.4 155 65.2
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.4e-51 205.7 236 49.2
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.1e-50 204.9 265 43.8
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 3.3e-47 193.4 193 50.8
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 2.3e-40 170.6 261 41.0
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.9e-34 151.0 115 59.1
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 2.4e-34 150.6 114 59.6
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.4e-34 150.6 118 62.7
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 1.2e-33 148.3 115 58.3
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 1.3e-32 144.8 310 31.6
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 1.9e-31 141.0 117 55.6
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.9e-31 141.0 190 42.6
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.1e-25 120.9 119 48.7
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.3e-24 118.2 291 29.9
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 3.0e-24 117.1 130 48.5
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 4.0e-21 106.7 72 66.7
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 3.8e-19 100.1 81 59.3
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 3.0e-16 90.5 77 53.2
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 3.9e-16 90.1 77 53.2
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 4.5e-12 76.6 56 58.9
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 1.9e-07 61.2 78 41.0
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 4.8e-06 56.6 69 42.0


User provided reference genes

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