Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 4.3e-221 771.2 434 100.0
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.0e-65 253.1 373 50.4
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.0e-64 250.8 351 52.7
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 5.9e-61 239.2 351 47.6
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 7.8e-61 238.8 330 51.2
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 3.9e-60 236.5 401 42.9
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 1.1e-59 235.0 288 58.7
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 2.5e-59 233.8 305 51.8
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 2.5e-59 233.8 328 50.6
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 3.3e-59 233.4 350 44.6
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 4.3e-59 233.0 362 45.3
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 5.6e-59 232.6 345 46.1
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 7.3e-59 232.3 305 51.5
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 9.5e-59 231.9 340 47.4
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 1.6e-58 231.1 417 42.7
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 2.1e-58 230.7 328 48.5
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 2.1e-58 230.7 301 51.2
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.1e-58 230.7 315 54.0
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 2.8e-58 230.3 335 47.2
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 2.8e-58 230.3 334 48.2
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.8e-58 230.3 333 47.7
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 4.7e-58 229.6 363 45.2
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 6.2e-58 229.2 359 46.2
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 6.2e-58 229.2 359 46.2
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 6.2e-58 229.2 332 47.6
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 6.2e-58 229.2 412 42.0
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 6.2e-58 229.2 304 50.3
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 8.0e-58 228.8 309 49.2
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 8.0e-58 228.8 438 40.6
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 1.0e-57 228.4 327 48.6
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 1.0e-57 228.4 305 50.8
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 1.0e-57 228.4 341 47.8
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 1.4e-57 228.0 336 47.6
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 2.3e-57 227.3 343 45.5
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 2.3e-57 227.3 337 48.4
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 2.3e-57 227.3 328 47.3
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 3.1e-57 226.9 340 46.5
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 3.1e-57 226.9 368 43.5
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 3.1e-57 226.9 319 48.3
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 3.1e-57 226.9 460 40.2
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 4.0e-57 226.5 324 47.8
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 5.2e-57 226.1 328 47.0
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 5.2e-57 226.1 365 44.9
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 6.8e-57 225.7 308 49.4
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 6.8e-57 225.7 311 49.2
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 6.8e-57 225.7 311 49.2
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 6.8e-57 225.7 311 49.2
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 6.8e-57 225.7 336 47.3
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 6.8e-57 225.7 335 47.5
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 8.9e-57 225.3 308 48.4
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 1.2e-56 224.9 319 47.6
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.2e-56 224.9 336 47.9
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 1.2e-56 224.9 342 46.2
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 1.5e-56 224.6 277 53.1
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 2.0e-56 224.2 329 47.7
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 2.0e-56 224.2 356 45.2
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 2.6e-56 223.8 330 45.8
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 4.4e-56 223.0 346 46.5
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 5.8e-56 222.6 311 48.6
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 7.5e-56 222.2 325 46.8
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 9.8e-56 221.9 308 48.1
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 9.8e-56 221.9 301 48.5
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 9.8e-56 221.9 321 47.0
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 1.3e-55 221.5 325 47.7
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 1.3e-55 221.5 303 47.9
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.3e-55 221.5 329 46.8
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 2.2e-55 220.7 325 47.1
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 2.9e-55 220.3 335 45.1
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 4.9e-55 219.5 326 47.5
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 4.9e-55 219.5 334 47.0
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 4.9e-55 219.5 368 42.9
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 6.4e-55 219.2 369 45.8
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 1.1e-54 218.4 318 47.8
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.9e-54 217.6 336 46.7
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 1.9e-54 217.6 382 38.5
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 2.4e-54 217.2 346 47.4
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 2.4e-54 217.2 302 49.7
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 2.4e-54 217.2 368 42.4
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 3.2e-54 216.9 326 47.5
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 3.2e-54 216.9 337 45.4
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 3.2e-54 216.9 368 42.4
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 4.1e-54 216.5 298 47.3
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 4.1e-54 216.5 351 46.2
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 5.4e-54 216.1 320 48.1
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 5.4e-54 216.1 328 46.6
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 5.4e-54 216.1 329 45.9
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 7.0e-54 215.7 344 44.5
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 9.2e-54 215.3 243 47.7
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 1.2e-53 214.9 327 47.4
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 1.2e-53 214.9 327 47.4
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 1.2e-53 214.9 312 47.1
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 2.7e-53 213.8 328 46.3
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 6.0e-53 212.6 329 47.4
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.7e-52 211.1 311 47.3
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 2.3e-52 210.7 326 45.4
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 5.0e-52 209.5 259 45.9
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 1.1e-51 208.4 258 45.7
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 4.3e-51 206.5 333 44.4
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 1.6e-50 204.5 280 50.0
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 4.7e-50 203.0 279 44.8
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 7.5e-48 195.7 383 43.3
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 3.7e-47 193.4 235 44.3
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 6.4e-47 192.6 392 39.0
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 3.2e-46 190.3 349 41.5
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 9.9e-40 168.7 319 42.3
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 3.5e-37 160.2 341 43.4
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 1.3e-36 158.3 180 48.3
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 3.9e-36 156.8 270 43.3
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.5e-35 154.8 174 47.1
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 2.5e-35 154.1 288 42.4
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 4.3e-35 153.3 361 38.5
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 9.6e-35 152.1 157 51.0
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 1.4e-30 138.3 129 54.3
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 7.1e-30 136.0 319 39.2
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.1e-22 112.1 303 36.0
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 1.0e-20 105.5 99 51.5
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 3.0e-20 104.0 77 61.0
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.9e-14 84.7 143 49.7
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 1.6e-13 81.6 150 48.0
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 4.3e-11 73.6 60 51.7


User provided reference genes

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