Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 1.2e-71 273.1 138 100.0
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 3.1e-40 168.7 128 64.1
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 1.0e-38 163.7 128 62.5
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 2.5e-37 159.1 133 60.2
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 3.2e-37 158.7 130 61.5
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 4.7e-36 154.8 133 56.4
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 6.1e-36 154.5 132 56.8
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 1.4e-35 153.3 130 57.7
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 3.0e-35 152.1 132 57.6
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 4.0e-35 151.8 130 56.9
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 4.0e-35 151.8 130 56.2
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 5.2e-35 151.4 130 56.9
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 6.8e-35 151.0 130 56.2
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 6.8e-35 151.0 123 58.5
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 6.8e-35 151.0 130 57.7
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 6.8e-35 151.0 130 57.7
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 8.8e-35 150.6 132 55.3
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 1.2e-34 150.2 130 56.2
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 1.2e-34 150.2 130 56.2
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 1.2e-34 150.2 132 55.3
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 1.2e-34 150.2 130 56.2
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 1.5e-34 149.8 130 56.9
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 1.5e-34 149.8 130 56.2
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.5e-34 149.8 130 54.6
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.5e-34 149.8 130 54.6
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.5e-34 149.8 130 54.6
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.5e-34 149.8 130 54.6
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 2.0e-34 149.4 130 54.6
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 2.6e-34 149.1 130 55.4
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.6e-34 149.1 130 53.8
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 2.6e-34 149.1 130 56.9
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 2.6e-34 149.1 130 56.2
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 4.4e-34 148.3 130 57.7
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 4.4e-34 148.3 120 59.2
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 5.7e-34 147.9 130 56.2
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 5.7e-34 147.9 129 55.0
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 5.7e-34 147.9 130 53.8
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 9.8e-34 147.1 123 59.3
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 9.8e-34 147.1 123 59.3
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 9.8e-34 147.1 120 60.0
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 9.8e-34 147.1 128 57.8
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 9.8e-34 147.1 130 55.4
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.3e-33 146.7 120 59.2
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 1.3e-33 146.7 130 55.4
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 1.7e-33 146.4 130 55.4
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.7e-33 146.4 130 53.8
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.7e-33 146.4 130 53.8
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 2.2e-33 146.0 127 55.9
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 2.8e-33 145.6 130 54.6
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 4.9e-33 144.8 130 56.9
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 4.9e-33 144.8 127 56.7
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 4.9e-33 144.8 127 55.9
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 6.3e-33 144.4 130 55.4
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 1.1e-32 143.7 120 57.5
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 1.1e-32 143.7 130 54.6
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 1.1e-32 143.7 130 54.6
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 1.1e-32 143.7 128 56.2
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 1.4e-32 143.3 130 56.9
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 1.8e-32 142.9 138 55.1
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 1.8e-32 142.9 125 56.8
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 3.1e-32 142.1 123 57.7
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 4.1e-32 141.7 123 56.9
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 5.4e-32 141.4 123 55.3
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 7.0e-32 141.0 130 54.6
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 1.2e-31 140.2 129 55.0
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 1.2e-31 140.2 120 56.7
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 1.2e-31 140.2 127 54.3
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 1.2e-31 140.2 130 53.1
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 1.6e-31 139.8 123 56.1
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 1.6e-31 139.8 123 55.3
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 1.6e-31 139.8 123 55.3
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 2.0e-31 139.4 123 55.3
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.0e-31 139.4 123 55.3
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 3.5e-31 138.7 130 54.6
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 4.5e-31 138.3 123 55.3
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 5.9e-31 137.9 130 54.6
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 5.9e-31 137.9 130 54.6
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 5.9e-31 137.9 130 54.6
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 5.9e-31 137.9 130 54.6
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 5.9e-31 137.9 123 55.3
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 7.7e-31 137.5 138 50.7
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 1.0e-30 137.1 121 55.4
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.0e-30 137.1 130 52.3
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 1.3e-30 136.7 130 53.1
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 1.3e-30 136.7 130 53.1
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 1.3e-30 136.7 130 53.8
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 2.3e-30 136.0 130 53.8
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 2.9e-30 135.6 130 53.1
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 2.9e-30 135.6 130 51.5
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 2.9e-30 135.6 129 51.2
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 3.8e-30 135.2 133 49.6
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 5.0e-30 134.8 120 55.8
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 5.0e-30 134.8 127 52.0
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 5.0e-30 134.8 129 51.2
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 6.6e-30 134.4 123 52.8
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 8.6e-30 134.0 130 51.5
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 8.6e-30 134.0 158 45.6
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 1.5e-29 133.3 127 51.2
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 1.9e-29 132.9 130 50.8
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 2.5e-29 132.5 128 53.1
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 2.5e-29 132.5 130 52.3
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 9.5e-29 130.6 139 51.8
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 9.5e-29 130.6 139 51.1
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 9.5e-29 130.6 139 51.8
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 9.5e-29 130.6 123 52.0
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.2e-28 130.2 124 55.6
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 1.6e-28 129.8 140 50.7
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 3.6e-28 128.6 143 49.7
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 4.7e-28 128.3 136 51.5
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 4.7e-28 128.3 136 51.5
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 6.1e-28 127.9 127 48.8
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 6.8e-27 124.4 123 48.8
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 2.2e-25 119.4 120 52.5
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 3.7e-25 118.6 133 45.9
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 5.4e-24 114.8 93 55.9
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 2.0e-23 112.8 162 38.3
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 5.9e-23 111.3 120 46.7
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 5.9e-23 111.3 97 56.7
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 5.0e-22 108.2 127 47.2
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 5.6e-21 104.8 120 45.8
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.3e-19 99.4 94 51.1
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 5.0e-14 81.6 66 59.1
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 5.0e-14 81.6 70 54.3
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 1.5e-13 80.1 66 56.1
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.9e-13 79.7 71 56.3
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 1.9e-13 79.7 67 55.2
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 2.5e-13 79.3 64 60.9
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 2.5e-13 79.3 64 60.9
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 3.3e-13 79.0 131 33.6
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 4.3e-13 78.6 74 50.0
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 4.3e-13 78.6 70 52.9
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 5.6e-13 78.2 66 53.0
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 1.6e-12 76.6 66 53.0
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 3.6e-12 75.5 67 52.2
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 3.6e-12 75.5 69 53.6
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 6.2e-12 74.7 66 53.0
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 1.4e-11 73.6 64 54.7
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 3.1e-11 72.4 58 53.4
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 8.9e-11 70.9 64 53.1
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 2.6e-10 69.3 67 50.7
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 4.4e-10 68.6 67 49.3
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 4.4e-10 68.6 65 49.2
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 5.8e-10 68.2 113 34.5
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 2.2e-09 66.2 56 55.4
PRCOL_00003180 Prasinoderma coloniale HOM05D000737 ORTHO05D000581 2.9e-09 65.9 106 33.0
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 9.2e-08 60.8 48 64.6


User provided reference genes

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