Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.1e-68 263.1 129 100.0
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.1e-63 246.5 127 95.3
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 7.2e-63 243.8 127 94.5
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 2.7e-62 241.9 127 95.3
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 1.8e-13 79.7 75 48.0
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 1.8e-13 79.7 69 53.6
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 4.0e-13 78.6 69 53.6
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 4.0e-13 78.6 74 48.6
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 4.0e-13 78.6 74 48.6
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 6.8e-13 77.8 69 52.2
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 1.2e-12 77.0 74 48.6
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 1.2e-12 77.0 70 54.3
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 1.5e-12 76.6 74 44.6
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 2.0e-12 76.3 69 47.8
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 2.0e-12 76.3 78 44.9
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 2.0e-12 76.3 89 41.6
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 2.6e-12 75.9 113 38.1
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 2.6e-12 75.9 73 49.3
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 3.4e-12 75.5 113 38.1
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 4.4e-12 75.1 74 47.3
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 5.8e-12 74.7 77 45.5
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 5.8e-12 74.7 69 50.7
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 5.8e-12 74.7 75 48.0
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 7.5e-12 74.3 69 50.7
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 7.5e-12 74.3 74 48.6
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 7.5e-12 74.3 74 47.3
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 7.5e-12 74.3 69 49.3
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 7.5e-12 74.3 69 50.7
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 9.8e-12 73.9 70 50.0
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 9.8e-12 73.9 69 50.7
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 9.8e-12 73.9 85 40.0
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.3e-11 73.6 71 53.5
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 1.7e-11 73.2 73 47.9
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 1.7e-11 73.2 69 49.3
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 2.2e-11 72.8 73 47.9
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 2.2e-11 72.8 69 50.7
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 2.2e-11 72.8 74 44.6
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 2.2e-11 72.8 69 49.3
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 2.2e-11 72.8 83 41.0
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 2.9e-11 72.4 66 48.5
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 2.9e-11 72.4 73 45.2
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 2.9e-11 72.4 69 47.8
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 3.7e-11 72.0 73 46.6
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 3.7e-11 72.0 73 46.6
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 3.7e-11 72.0 73 46.6
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 3.7e-11 72.0 73 46.6
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 3.7e-11 72.0 73 46.6
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 3.7e-11 72.0 73 46.6
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 3.7e-11 72.0 69 49.3
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 3.7e-11 72.0 66 51.5
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 3.7e-11 72.0 69 49.3
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 6.4e-11 71.2 73 46.6
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 6.4e-11 71.2 69 50.7
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 6.4e-11 71.2 69 50.7
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 6.4e-11 71.2 82 42.7
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 6.4e-11 71.2 82 42.7
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 6.4e-11 71.2 73 46.6
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 6.4e-11 71.2 69 49.3
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 8.3e-11 70.9 73 47.9
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 8.3e-11 70.9 95 40.0
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 1.1e-10 70.5 69 50.7
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.1e-10 70.5 82 42.7
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 1.1e-10 70.5 69 49.3
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 1.1e-10 70.5 69 49.3
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 1.1e-10 70.5 69 49.3
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 1.1e-10 70.5 94 38.3
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 1.1e-10 70.5 69 49.3
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 1.4e-10 70.1 73 45.2
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 1.9e-10 69.7 69 50.7
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 1.9e-10 69.7 69 47.8
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 1.9e-10 69.7 69 49.3
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.9e-10 69.7 82 41.5
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 1.9e-10 69.7 95 38.9
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 1.9e-10 69.7 82 43.9
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 2.4e-10 69.3 82 42.7
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 3.2e-10 68.9 69 47.8
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 4.1e-10 68.6 69 46.4
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 5.4e-10 68.2 98 40.8
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 5.4e-10 68.2 69 52.2
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 7.0e-10 67.8 69 46.4
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 7.0e-10 67.8 82 41.5
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 7.0e-10 67.8 69 46.4
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 9.2e-10 67.4 73 43.8
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 9.2e-10 67.4 69 46.4
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 9.2e-10 67.4 69 42.0
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 9.2e-10 67.4 73 45.2
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 9.2e-10 67.4 69 50.7
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 1.2e-09 67.0 69 47.8
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 1.2e-09 67.0 69 47.8
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.6e-09 66.6 55 54.5
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 2.7e-09 65.9 69 44.9
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 2.7e-09 65.9 65 49.2
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 3.5e-09 65.5 70 47.1
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 1.0e-08 63.9 69 44.9
Gorai.010G005700 Gossypium raimondii HOM05D002848 ORTHO05D003043 1.0e-08 63.9 70 50.0
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 1.0e-08 63.9 60 48.3
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 1.0e-08 63.9 73 42.5
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 1.0e-08 63.9 69 43.5
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 1.3e-08 63.5 124 33.9
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 1.3e-08 63.5 69 44.9
Gohir.D06G001300 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.7e-08 63.2 70 50.0
Phvul.002G110100 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 1.7e-08 63.2 119 34.5
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 1.7e-08 63.2 69 43.5
ECA233G1527 Erigeron canadensis HOM05D002848 ORTHO05D003043 3.0e-08 62.4 67 47.8
PSO675G8906 Papaver somniferum HOM05D002848 ORTHO05D003043 3.0e-08 62.4 69 44.9
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 3.0e-08 62.4 66 48.5
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 5.0e-08 61.6 73 41.1
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 5.0e-08 61.6 75 41.3
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 5.0e-08 61.6 63 49.2
Lj2g0018127 Lotus japonicus HOM05D002848 ORTHO05D003043 8.6e-08 60.8 67 50.7
CAN.G1671.1 Capsicum annuum HOM05D002848 ORTHO05D003043 1.1e-07 60.5 68 44.1
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 1.1e-07 60.5 97 37.1
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 1.9e-07 59.7 73 46.6
Mapoly0111s0041 Marchantia polymorpha HOM05D002848 ORTHO05D003043 3.3e-07 58.9 75 44.0
PSO541G4561 Papaver somniferum HOM05D002848 ORTHO05D003043 3.3e-07 58.9 69 43.5
VMungo0251G2011 Vigna mungo HOM05D002848 ORTHO05D003043 3.3e-07 58.9 69 44.9
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 4.3e-07 58.5 60 48.3
AT1G19860 Arabidopsis thaliana HOM05D002848 ORTHO05D003043 5.6e-07 58.2 71 42.3
CiPaw.08G064200 Carya illinoinensis HOM05D002848 ORTHO05D003043 5.6e-07 58.2 53 52.8
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 5.6e-07 58.2 59 47.5
BcaB03g12895 Brassica carinata HOM05D002848 ORTHO05D003043 7.3e-07 57.8 71 43.7
BcaC07g39005 Brassica carinata HOM05D002848 ORTHO05D003043 7.3e-07 57.8 71 43.7
C08p19770 Brassica napus HOM05D002848 ORTHO05D003043 7.3e-07 57.8 71 43.7
BolC8t49614H Brassica oleracea HOM05D002848 ORTHO05D003043 7.3e-07 57.8 71 43.7
CARHR020360 Cardamine hirsuta HOM05D002848 ORTHO05D003043 7.3e-07 57.8 68 45.6
Lsat_1_v5_gn_8_31441 Lactuca sativa HOM05D002848 ORTHO05D003043 7.3e-07 57.8 55 49.1
Oeu007349.2 Olea europaea HOM05D002848 ORTHO05D003043 7.3e-07 57.8 62 48.4
BcaB07g32004 Brassica carinata HOM05D002848 ORTHO05D003043 9.5e-07 57.4 71 43.7
CSS0049415 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 9.5e-07 57.4 71 45.1
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 9.5e-07 57.4 96 35.4
Ca_19632_v3 Cicer arietinum L. HOM05D002848 ORTHO05D003043 9.5e-07 57.4 69 44.9
HanXRQChr12g0367651 Helianthus annuus HOM05D002848 ORTHO05D003043 9.5e-07 57.4 52 50.0
Solyc00g007350.1 Solanum lycopersicum HOM05D010460 ORTHO05D014683 9.5e-07 57.4 68 42.6
Solyc00g012540.1 Solanum lycopersicum HOM05D010460 ORTHO05D014683 9.5e-07 57.4 68 42.6
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 9.5e-07 57.4 69 43.5
BraA08t34900Z Brassica rapa HOM05D002848 ORTHO05D003043 1.2e-06 57.0 71 43.7
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 1.2e-06 57.0 63 42.9
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 1.2e-06 57.0 63 42.9
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 1.2e-06 57.0 69 43.5
TWI53G0820 Tripterygium wilfordii HOM05D002848 ORTHO05D003043 1.2e-06 57.0 74 43.2
Aqoxy6G02321 Aquilegia oxysepala HOM05D002848 ORTHO05D003043 1.6e-06 56.6 65 44.6
Carub.0001s1938 Capsella rubella HOM05D002848 ORTHO05D003043 1.6e-06 56.6 71 42.3
Nn5g29271 Nelumbo nucifera HOM05D002848 ORTHO05D003043 1.6e-06 56.6 52 48.1
Oeu046254.1 Olea europaea HOM05D002848 ORTHO05D003043 1.6e-06 56.6 52 50.0
Sed0009314 Sechium edule HOM05D002848 ORTHO05D003043 1.6e-06 56.6 108 38.9
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 2.1e-06 56.2 67 41.8
Sed0014337 Sechium edule HOM05D002848 ORTHO05D003043 2.1e-06 56.2 69 46.4
PGSC0003DMG400003556 Solanum tuberosum HOM05D002848 ORTHO05D003043 2.1e-06 56.2 101 33.7
TAR625G0420 Trochodendron aralioides HOM05D002848 ORTHO05D003043 2.1e-06 56.2 64 45.3
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 2.8e-06 55.8 69 40.6
Ah.11g039460 Amaranthus hybridus HOM05D002848 ORTHO05D003043 2.8e-06 55.8 52 50.0
A08p29640 Brassica napus HOM05D002848 ORTHO05D003043 2.8e-06 55.8 71 42.3
CAN.G724.40 Capsicum annuum HOM05D002848 ORTHO05D003043 2.8e-06 55.8 61 47.5
AUR62035722 Chenopodium quinoa HOM05D002848 ORTHO05D003043 2.8e-06 55.8 52 50.0
CsaV3_6G046970 Cucumis sativus L. HOM05D002848 ORTHO05D003043 2.8e-06 55.8 76 43.4
Dinv31824 Davidia involucrata HOM05D002848 ORTHO05D003043 2.8e-06 55.8 52 53.8
Gohir.D11G184300 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.8e-06 55.8 72 45.8
Gorai.007G196000 Gossypium raimondii HOM05D002848 ORTHO05D003043 2.8e-06 55.8 72 45.8
Medtr8g076080 Medicago truncatula HOM05D002848 ORTHO05D003043 2.8e-06 55.8 67 46.3
Phvul.003G260700 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 2.8e-06 55.8 67 46.3
Prupe.7G166800 Prunus persica HOM05D002848 ORTHO05D003043 2.8e-06 55.8 67 44.8
Sc02g0008430 Simmondsia chinensis HOM05D002848 ORTHO05D003043 2.8e-06 55.8 64 42.2
Actinidia16964 Actinidia chinensis HOM05D002848 ORTHO05D003043 3.6e-06 55.5 77 44.2
BcaC05g25878 Brassica carinata HOM05D002848 ORTHO05D003043 3.6e-06 55.5 71 40.8
C05p18320 Brassica napus HOM05D002848 ORTHO05D003043 3.6e-06 55.5 71 40.8
BolC5t30542H Brassica oleracea HOM05D002848 ORTHO05D003043 3.6e-06 55.5 71 40.8
AUR62035435 Chenopodium quinoa HOM05D002848 ORTHO05D003043 3.6e-06 55.5 52 50.0
Glyma.11G075900 Glycine max HOM05D002848 ORTHO05D003043 3.6e-06 55.5 86 41.9
Gohir.A06G005500 Gossypium hirsutum HOM05D002848 ORTHO05D003043 3.6e-06 55.5 52 51.9
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 3.6e-06 55.5 65 43.1
DCAR_009936 Daucus carota HOM05D002848 ORTHO05D003043 4.7e-06 55.1 86 37.2
Gohir.A11G176500 Gossypium hirsutum HOM05D002848 ORTHO05D003043 4.7e-06 55.1 64 50.0
Manes.18G016000 Manihot esculenta HOM05D002848 ORTHO05D003043 4.7e-06 55.1 52 51.9
Sp1g17660 Schrenkiella parvula HOM05D002848 ORTHO05D003043 4.7e-06 55.1 71 42.3
AL1G32590 Arabidopsis lyrata HOM05D002848 ORTHO05D003043 6.2e-06 54.7 74 40.5
EL10Ac1g02255 Beta vulgaris HOM05D002848 ORTHO05D003043 6.2e-06 54.7 67 43.3
ClCG01G020170 Citrullus lanatus HOM05D002848 ORTHO05D003043 6.2e-06 54.7 68 45.6
Glyma.02G049700 Glycine max HOM05D002848 ORTHO05D003043 6.2e-06 54.7 68 45.6
Thecc.08G040800 Theobroma cacao HOM05D002848 ORTHO05D003043 6.2e-06 54.7 52 51.9
Aa31LG7G4370 Aethionema arabicum HOM05D004047 ORTHO05D003043 8.1e-06 54.3 71 40.8
Ciclev10000970m.g Citrus clementina HOM05D002848 ORTHO05D003043 8.1e-06 54.3 70 41.4
Dinv39498 Davidia involucrata HOM05D002848 ORTHO05D003043 8.1e-06 54.3 52 51.9
Duzib041G0763 Durio zibethinus HOM05D002848 ORTHO05D003043 8.1e-06 54.3 71 45.1


User provided reference genes

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