Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 1.1e-105 386.7 204 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 6.2e-61 238.0 150 76.7
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 5.5e-57 224.9 150 70.7
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 1.2e-56 223.8 154 72.1
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.3e-53 213.8 150 66.7
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 1.3e-53 213.8 150 66.7
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 8.1e-53 211.1 170 59.4
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 1.2e-51 207.2 151 66.2
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 1.5e-51 206.8 150 66.0
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 2.0e-51 206.5 150 64.0
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 2.0e-51 206.5 151 64.9
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 2.6e-51 206.1 150 65.3
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 2.6e-51 206.1 151 64.9
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 4.5e-51 205.3 150 63.3
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 5.8e-51 204.9 150 64.0
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 1.0e-50 204.1 150 67.3
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 2.2e-50 203.0 150 66.7
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.9e-50 202.6 150 62.0
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 2.9e-50 202.6 151 64.2
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 3.8e-50 202.2 150 64.7
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 4.9e-50 201.8 150 62.0
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 4.9e-50 201.8 151 63.6
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 6.5e-50 201.4 150 62.0
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 6.5e-50 201.4 150 62.0
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 8.4e-50 201.1 151 63.6
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 8.4e-50 201.1 150 63.3
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 1.1e-49 200.7 150 63.3
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 1.4e-49 200.3 150 63.3
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 1.9e-49 199.9 151 62.3
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 2.5e-49 199.5 150 62.0
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 3.2e-49 199.1 150 63.3
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 4.2e-49 198.7 150 62.0
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 4.2e-49 198.7 150 62.0
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 4.2e-49 198.7 150 61.3
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 5.5e-49 198.4 150 61.3
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 5.5e-49 198.4 151 62.9
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 5.5e-49 198.4 170 59.4
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 5.5e-49 198.4 152 62.5
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 7.1e-49 198.0 167 57.5
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 9.3e-49 197.6 167 58.1
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 1.2e-48 197.2 166 58.4
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 1.6e-48 196.8 164 60.4
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.6e-48 196.8 193 52.8
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.1e-48 196.4 151 60.9
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 2.7e-48 196.1 152 61.8
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 2.7e-48 196.1 151 62.3
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 2.7e-48 196.1 151 62.3
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 3.5e-48 195.7 150 61.3
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 3.5e-48 195.7 185 54.1
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 6.0e-48 194.9 171 56.7
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 6.0e-48 194.9 152 59.2
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 6.0e-48 194.9 151 61.6
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 7.9e-48 194.5 151 61.6
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 1.0e-47 194.1 151 60.9
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.3e-47 193.7 151 64.2
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 1.3e-47 193.7 151 61.6
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 1.8e-47 193.4 151 60.9
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 1.8e-47 193.4 163 60.7
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 1.8e-47 193.4 151 62.9
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 2.3e-47 193.0 151 61.6
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 2.3e-47 193.0 153 60.8
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 2.3e-47 193.0 150 60.0
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 3.0e-47 192.6 151 62.9
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 5.1e-47 191.8 152 63.2
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 5.1e-47 191.8 151 60.9
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 5.1e-47 191.8 151 60.3
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 5.1e-47 191.8 151 62.3
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 6.7e-47 191.4 193 53.9
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 8.7e-47 191.0 151 61.6
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 1.9e-46 189.9 151 60.3
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 2.5e-46 189.5 150 62.0
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 2.5e-46 189.5 151 61.6
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 4.3e-46 188.7 151 61.6
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 9.6e-46 187.6 152 58.6
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 9.6e-46 187.6 151 58.9
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 1.3e-45 187.2 152 58.6
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 4.8e-45 185.3 112 75.9
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 8.2e-45 184.5 151 59.6
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 8.2e-45 184.5 154 58.4
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 8.2e-45 184.5 152 57.9
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 1.4e-44 183.7 191 50.8
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 5.3e-44 181.8 152 57.9
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 5.3e-44 181.8 152 57.9
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 4.5e-43 178.7 168 54.8
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 8.5e-42 174.5 239 42.7
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 9.3e-41 171.0 171 52.6
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 1.0e-39 167.5 132 65.2
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 1.0e-39 167.5 149 54.4
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 6.7e-39 164.9 164 53.7
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 5.7e-38 161.8 116 63.8
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 2.8e-37 159.5 112 66.1
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 6.9e-36 154.8 114 64.0
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 1.5e-35 153.7 122 60.7
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 5.0e-34 148.7 150 52.0
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 3.0e-31 139.4 109 63.3
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 3.0e-31 139.4 107 63.6
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 3.3e-30 136.0 150 48.7
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 2.8e-29 132.9 88 69.3
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 1.5e-27 127.1 89 66.3
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 1.8e-20 103.6 77 66.2
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 9.4e-17 91.3 151 36.4
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 5.7e-14 82.0 62 64.5
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 5.0e-10 68.9 81 49.4
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 9.4e-09 64.7 61 55.7
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 3.0e-07 59.7 56 53.6


User provided reference genes

Program Settings