Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 5.6e-170 600.9 312 100.0
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 4.3e-77 292.4 211 69.7
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 4.0e-75 285.8 196 70.9
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 2.6e-74 283.1 240 62.9
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 4.4e-74 282.3 190 71.1
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 5.7e-74 282.0 195 70.8
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 1.3e-73 280.8 195 70.3
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 1.7e-73 280.4 196 68.9
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 2.2e-73 280.0 195 70.3
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 2.2e-73 280.0 195 69.7
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 2.2e-73 280.0 195 69.7
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 3.7e-73 279.3 195 70.8
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 3.7e-73 279.3 194 69.1
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 6.4e-73 278.5 220 64.5
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 6.4e-73 278.5 195 69.7
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 6.4e-73 278.5 195 70.3
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 8.3e-73 278.1 195 69.2
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 8.3e-73 278.1 195 69.2
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.1e-72 277.7 195 70.3
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 1.1e-72 277.7 226 61.9
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.8e-72 276.9 195 70.3
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 2.4e-72 276.6 195 68.7
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 2.4e-72 276.6 221 64.3
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 2.4e-72 276.6 200 68.5
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 4.1e-72 275.8 194 69.6
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 4.1e-72 275.8 190 72.1
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 4.1e-72 275.8 195 69.2
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 4.1e-72 275.8 216 63.9
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 4.1e-72 275.8 195 68.7
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 4.1e-72 275.8 195 68.7
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 4.1e-72 275.8 208 67.3
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 5.4e-72 275.4 211 64.9
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 7.0e-72 275.0 190 70.5
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 7.0e-72 275.0 195 67.7
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 9.2e-72 274.6 194 68.6
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 9.2e-72 274.6 193 67.9
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 9.2e-72 274.6 212 65.6
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 1.2e-71 274.2 193 68.9
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 1.2e-71 274.2 212 65.6
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 1.2e-71 274.2 195 68.2
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 1.6e-71 273.9 191 69.1
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 1.6e-71 273.9 194 69.1
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 1.6e-71 273.9 201 66.7
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 1.6e-71 273.9 193 68.9
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 2.0e-71 273.5 195 67.7
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 2.0e-71 273.5 239 59.8
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 2.7e-71 273.1 194 69.1
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 2.7e-71 273.1 195 67.7
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 2.7e-71 273.1 212 65.6
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 3.5e-71 272.7 207 66.2
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 3.5e-71 272.7 194 68.0
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 3.5e-71 272.7 194 69.1
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 3.5e-71 272.7 239 59.4
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 4.6e-71 272.3 195 68.2
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 5.9e-71 271.9 201 65.2
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 5.9e-71 271.9 194 67.5
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 5.9e-71 271.9 190 68.9
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 7.8e-71 271.6 227 61.7
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 7.8e-71 271.6 194 69.1
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 7.8e-71 271.6 193 67.9
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 1.0e-70 271.2 195 68.7
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.0e-70 271.2 219 62.1
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 1.7e-70 270.4 195 67.2
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.7e-70 270.4 219 62.6
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 2.3e-70 270.0 195 67.2
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 2.3e-70 270.0 195 67.7
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 2.3e-70 270.0 194 67.0
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 2.3e-70 270.0 195 68.2
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 3.0e-70 269.6 197 67.5
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 3.9e-70 269.2 189 68.8
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 3.9e-70 269.2 188 68.6
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 5.0e-70 268.9 190 69.5
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 6.6e-70 268.5 275 54.9
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 1.1e-69 267.7 191 68.1
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 1.1e-69 267.7 191 68.1
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 1.1e-69 267.7 221 62.4
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 1.5e-69 267.3 215 61.9
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 1.5e-69 267.3 215 62.3
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 1.9e-69 266.9 203 64.0
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 1.9e-69 266.9 268 54.1
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 1.9e-69 266.9 194 66.0
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 3.3e-69 266.2 189 67.7
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 3.3e-69 266.2 208 64.4
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 4.3e-69 265.8 189 68.3
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 5.6e-69 265.4 194 69.6
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 7.3e-69 265.0 189 68.8
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 7.3e-69 265.0 220 62.3
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 2.8e-68 263.1 191 68.1
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 2.8e-68 263.1 233 59.2
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 3.6e-68 262.7 221 61.1
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 3.6e-68 262.7 200 63.5
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 3.6e-68 262.7 208 63.9
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 6.2e-68 261.9 197 65.0
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 8.0e-68 261.5 189 68.8
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 1.0e-67 261.2 189 68.3
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 1.0e-67 261.2 191 67.5
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 1.8e-67 260.4 191 66.5
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 2.3e-67 260.0 192 64.6
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 6.8e-67 258.5 189 65.1
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 1.2e-66 257.7 204 63.7
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 1.5e-66 257.3 195 64.6
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 5.4e-64 248.8 195 64.1
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 8.9e-59 231.5 195 59.5
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 1.7e-57 227.3 201 60.7
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 6.0e-55 218.8 150 72.0
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 2.3e-54 216.9 202 54.0
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 3.9e-54 216.1 200 55.0
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 6.6e-54 215.3 173 67.1
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 2.3e-51 206.8 206 52.4
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 1.2e-44 184.5 132 70.5
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 1.1e-43 181.4 133 68.4
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 2.0e-42 177.2 110 78.2
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 6.4e-41 172.2 133 65.4
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 8.4e-41 171.8 195 49.7
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 1.4e-40 171.0 201 43.3
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 5.6e-37 159.1 110 66.4
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 4.8e-36 156.0 183 46.4
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 3.9e-22 109.8 116 51.7
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.1e-21 108.2 81 67.9
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 4.1e-11 73.2 74 55.4
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 7.6e-10 68.9 47 70.2
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 1.1e-08 65.1 95 45.3
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 6.1e-07 59.3 44 56.8


User provided reference genes

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