Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0053s0103 Marchantia polymorpha HOM05D021852 ORTHO05D002972 5.6e-77 290.8 142 100.0
Pp3c13_7880 Physcomitrium patens HOM05D021852 ORTHO05D031192 1.2e-15 87.0 136 39.0
AagrBONN_evm.TU.Sc2ySwM_344.874 Anthoceros agrestis HOM05D021852 ORTHO05D031192 1.8e-14 83.2 118 36.4
Pp3c3_4150 Physcomitrium patens HOM05D021852 ORTHO05D031192 5.2e-14 81.6 136 40.4
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 5.9e-10 68.2 142 31.7
Nn8g40794 Nelumbo nucifera HOM05D002763 ORTHO05D002972 5.9e-10 68.2 87 35.6
Rhsim01G0117300 Rhododendron simsii HOM05D002763 ORTHO05D002972 1.0e-09 67.4 79 39.2
CDE02G2077 Ceratophyllum demersum HOM05D002763 ORTHO05D002972 1.7e-09 66.6 88 33.0
Dinv25438 Davidia involucrata HOM05D002763 ORTHO05D002972 1.7e-09 66.6 78 37.2
CSS0013694 Camellia sinensis var. sinensis HOM05D002763 ORTHO05D002972 2.3e-09 66.2 89 33.7
vmacro20817 Vaccinium macrocarpon HOM05D002763 ORTHO05D002972 2.9e-09 65.9 79 36.7
ATR0626G079 Amborella trichopoda HOM05D002763 ORTHO05D002972 3.8e-09 65.5 93 32.3
FAN17G1264 Fragaria x ananassa HOM05D002763 ORTHO05D002972 3.8e-09 65.5 83 36.1
Actinidia02502 Actinidia chinensis HOM05D002763 ORTHO05D002972 5.0e-09 65.1 87 33.3
PSO170G6627 Papaver somniferum HOM05D002763 ORTHO05D002972 5.0e-09 65.1 115 33.9
CDE06G0951 Ceratophyllum demersum HOM05D002763 ORTHO05D002972 6.6e-09 64.7 88 31.8
MBI13_g34038_MAGBIO Magnolia biondii HOM05D002763 ORTHO05D002972 6.6e-09 64.7 78 37.2
PSO063G7647 Papaver somniferum HOM05D002763 ORTHO05D002972 6.6e-09 64.7 114 34.2
AUR62021349 Chenopodium quinoa HOM05D002763 ORTHO05D002972 8.6e-09 64.3 88 34.1
EL10Ac8g18334 Beta vulgaris HOM05D002763 ORTHO05D002972 1.5e-08 63.5 92 33.7
RcHm_v2.0_Chr4g0399691 Rosa chinensis HOM05D002763 ORTHO05D002972 1.5e-08 63.5 83 34.9
Nn2g12759 Nelumbo nucifera HOM05D002763 ORTHO05D002972 1.9e-08 63.2 78 35.9
MD17G1163800 Malus domestica HOM05D002763 ORTHO05D002972 2.5e-08 62.8 94 35.1
Prupe.3G021500 Prunus persica HOM05D002763 ORTHO05D002972 2.5e-08 62.8 126 31.7
TAR383G0950 Trochodendron aralioides HOM05D002763 ORTHO05D002972 2.5e-08 62.8 77 35.1
Dinv41172 Davidia involucrata HOM05D002763 ORTHO05D002972 4.3e-08 62.0 80 33.8
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.3e-08 62.0 78 35.9
FAN12G1372 Fragaria x ananassa HOM05D002763 ORTHO05D002972 4.3e-08 62.0 78 35.9
GSVIVG01010865001 Vitis vinifera HOM05D002763 ORTHO05D002972 5.6e-08 61.6 68 42.6
CiPaw.08G032700 Carya illinoinensis HOM05D002763 ORTHO05D002972 7.3e-08 61.2 92 32.6
Dinv20341 Davidia involucrata HOM05D002763 ORTHO05D002972 7.3e-08 61.2 78 32.1
PGR142G4135 Punica granatum HOM05D002763 ORTHO05D002972 7.3e-08 61.2 85 37.6
RcHm_v2.0_Chr2g0149611 Rosa chinensis HOM05D002763 ORTHO05D002972 7.3e-08 61.2 107 35.5
Actinidia00644 Actinidia chinensis HOM05D002763 ORTHO05D002972 9.5e-08 60.8 90 31.1
PGSC0003DMG400026511 Solanum tuberosum HOM05D002763 ORTHO05D002972 9.5e-08 60.8 88 33.0
Aa31LG8G16240 Aethionema arabicum HOM05D002763 ORTHO05D002972 1.2e-07 60.5 87 33.3
C07p24110 Brassica napus HOM05D002763 ORTHO05D002972 1.2e-07 60.5 69 37.7
CiPaw.01G090200 Carya illinoinensis HOM05D002763 ORTHO05D002972 1.2e-07 60.5 80 37.5
HanXRQChr03g0068451 Helianthus annuus HOM05D002763 ORTHO05D002972 1.2e-07 60.5 82 37.8
Manes.06G177000 Manihot esculenta HOM05D002763 ORTHO05D002972 1.2e-07 60.5 95 35.8
Gohir.D06G122400 Gossypium hirsutum HOM05D002763 ORTHO05D002972 1.6e-07 60.1 107 30.8
Gorai.010G142600 Gossypium raimondii HOM05D002763 ORTHO05D002972 1.6e-07 60.1 107 30.8
Ciclev10009733m.g Citrus clementina HOM05D002763 ORTHO05D002972 2.1e-07 59.7 90 34.4
FAN22G0322 Fragaria x ananassa HOM05D002763 ORTHO05D002972 2.1e-07 59.7 75 36.0
Os08g0230000 Oryza sativa ssp. japonica HOM05D002763 ORTHO05D002972 2.1e-07 59.7 108 32.4
SHI49894 Sapria himalayana HOM05D002763 ORTHO05D002972 2.1e-07 59.7 75 34.7
SHI50553 Sapria himalayana HOM05D002763 ORTHO05D002972 2.1e-07 59.7 75 34.7
Solyc06g063320.3 Solanum lycopersicum HOM05D002763 ORTHO05D002972 2.1e-07 59.7 80 32.5
Sopen06g022790 Solanum pennellii HOM05D002763 ORTHO05D002972 2.1e-07 59.7 80 32.5
THA.LOC104813630 Tarenaya hassleriana HOM05D002763 ORTHO05D002972 2.1e-07 59.7 97 32.0
CARHR072470 Cardamine hirsuta HOM05D002763 ORTHO05D002972 2.8e-07 59.3 72 40.3
Sp3g32570 Schrenkiella parvula HOM05D002763 ORTHO05D002972 2.8e-07 59.3 69 37.7
Sp5g33900 Schrenkiella parvula HOM05D002763 ORTHO05D002972 2.8e-07 59.3 96 33.3
SMO116G0406 Selaginella moellendorffii HOM05D021852 ORTHO05D002972 2.8e-07 59.3 120 32.5
SMO364G0833 Selaginella moellendorffii HOM05D017469 ORTHO05D050896 2.8e-07 59.3 89 38.2
TAR626G0777 Trochodendron aralioides HOM05D002763 ORTHO05D002972 2.8e-07 59.3 73 34.2
BcaB03g14401 Brassica carinata HOM05D002763 ORTHO05D002972 3.6e-07 58.9 69 36.2
A07p16410 Brassica napus HOM05D002763 ORTHO05D002972 3.6e-07 58.9 69 36.2
C07p24120 Brassica napus HOM05D002763 ORTHO05D002972 3.6e-07 58.9 69 36.2
BolC7t42935H Brassica oleracea HOM05D002763 ORTHO05D002972 3.6e-07 58.9 69 36.2
BraA07t29368Z Brassica rapa HOM05D002763 ORTHO05D002972 3.6e-07 58.9 69 36.2
CSS0007147 Camellia sinensis var. sinensis HOM05D002763 ORTHO05D002972 3.6e-07 58.9 93 26.9
Sc15g0001020 Simmondsia chinensis HOM05D002763 ORTHO05D002972 3.6e-07 58.9 91 34.1
Sc17g0004450 Simmondsia chinensis HOM05D002763 ORTHO05D002972 3.6e-07 58.9 75 33.3
BcaC08g47445 Brassica carinata HOM05D002763 ORTHO05D002972 4.7e-07 58.5 83 36.1
C06p52800 Brassica napus HOM05D003490 ORTHO05D004835 4.7e-07 58.5 83 36.1
BolC6t40296H Brassica oleracea HOM05D002763 ORTHO05D002972 4.7e-07 58.5 83 36.1
CARHR109660 Cardamine hirsuta HOM05D002763 ORTHO05D002972 4.7e-07 58.5 80 33.8
Duzib160G0230 Durio zibethinus HOM05D002763 ORTHO05D002972 4.7e-07 58.5 113 31.0
Migut.L01884 Erythranthe guttata HOM05D002763 ORTHO05D002972 4.7e-07 58.5 87 34.5
FAN09G4381 Fragaria x ananassa HOM05D002763 ORTHO05D002972 4.7e-07 58.5 91 36.3
Hma1.2p1_0517F.1_g170750 Hydrangea macrophylla HOM05D002763 ORTHO05D002972 4.7e-07 58.5 80 37.5
Manes.14G007800 Manihot esculenta HOM05D002763 ORTHO05D002972 4.7e-07 58.5 92 35.9
Oeu049640.1 Olea europaea HOM05D002763 ORTHO05D002972 4.7e-07 58.5 83 30.1
Sabra08G0003000 Salix brachista HOM05D002763 ORTHO05D002972 4.7e-07 58.5 90 36.7
BcaB03g16049 Brassica carinata HOM05D002763 ORTHO05D002972 6.1e-07 58.2 85 37.6
A07p44070 Brassica napus HOM05D003490 ORTHO05D004835 6.1e-07 58.2 83 36.1
BraA07t31914Z Brassica rapa HOM05D002763 ORTHO05D002972 6.1e-07 58.2 83 36.1
FAN05G0930 Fragaria x ananassa HOM05D002763 ORTHO05D002972 6.1e-07 58.2 119 31.9
AT2G19180 Arabidopsis thaliana HOM05D002763 ORTHO05D002972 8.0e-07 57.8 82 32.9
FAN02G2417 Fragaria x ananassa HOM05D002763 ORTHO05D002972 8.0e-07 57.8 119 31.9
Zm00001eb414180 Zea mays HOM05D002763 ORTHO05D002972 8.0e-07 57.8 107 33.6
AL3G52740 Arabidopsis lyrata HOM05D002763 ORTHO05D002972 1.0e-06 57.4 76 34.2
Carub.0003s3344 Capsella rubella HOM05D002763 ORTHO05D002972 1.0e-06 57.4 76 34.2
CiPaw.07G196700 Carya illinoinensis HOM05D002763 ORTHO05D002972 1.0e-06 57.4 68 33.8
FvH4_4g07330 Fragaria vesca HOM05D002763 ORTHO05D002972 1.0e-06 57.4 67 37.3
MD16G1249400 Malus domestica HOM05D002763 ORTHO05D002972 1.0e-06 57.4 67 34.3
Carub.0002s2571 Capsella rubella HOM05D002763 ORTHO05D002972 1.4e-06 57.0 85 36.5
FvH4_6g37060 Fragaria vesca HOM05D002763 ORTHO05D002972 1.4e-06 57.0 111 32.4
FAN14G0253 Fragaria x ananassa HOM05D002763 ORTHO05D002972 1.4e-06 57.0 111 32.4
Prupe.1G076200 Prunus persica HOM05D002763 ORTHO05D002972 1.8e-06 56.6 67 35.8
SGA_v2.0_scaffold71G23992 Striga asiatica HOM05D002763 ORTHO05D002972 1.8e-06 56.6 66 39.4
THA.LOC104808102 Tarenaya hassleriana HOM05D002763 ORTHO05D002972 1.8e-06 56.6 96 32.3
AT1G78890 Arabidopsis thaliana HOM05D002763 ORTHO05D002972 2.3e-06 56.2 71 39.4
Duzib235G0511 Durio zibethinus HOM05D002763 ORTHO05D002972 2.3e-06 56.2 109 30.3
Migut.I01192 Erythranthe guttata HOM05D002763 ORTHO05D002972 2.3e-06 56.2 115 23.5
Potri.008G005900 Populus trichocarpa HOM05D002763 ORTHO05D002972 2.3e-06 56.2 85 36.5
SGA_v2.0_scaffold31G12762 Striga asiatica HOM05D002763 ORTHO05D002972 2.3e-06 56.2 112 32.1
Aa31LG4G2120 Aethionema arabicum HOM05D002763 ORTHO05D002972 3.0e-06 55.8 67 37.3
MELO3C022650.2 Cucumis melo HOM05D002763 ORTHO05D002972 3.0e-06 55.8 97 36.1
Oeu064555.1 Olea europaea HOM05D002763 ORTHO05D002972 3.0e-06 55.8 85 35.3
TWI63G0655 Tripterygium wilfordii HOM05D002763 ORTHO05D002972 3.0e-06 55.8 68 38.2
BcaB07g31615 Brassica carinata HOM05D002763 ORTHO05D002972 4.0e-06 55.5 76 34.2
BcaB08g34846 Brassica carinata HOM05D002763 ORTHO05D002972 4.0e-06 55.5 136 28.7
Gohir.D10G002500 Gossypium hirsutum HOM05D002763 ORTHO05D002972 4.0e-06 55.5 118 29.7
HanXRQChr05g0140091 Helianthus annuus HOM05D002763 ORTHO05D002972 4.0e-06 55.5 129 30.2
Lsat_1_v5_gn_7_56340 Lactuca sativa HOM05D002763 ORTHO05D002972 4.0e-06 55.5 81 30.9
Lsat_1_v5_gn_8_69300 Lactuca sativa HOM05D002763 ORTHO05D002972 4.0e-06 55.5 89 27.0
Potri.010G252800 Populus trichocarpa HOM05D002763 ORTHO05D002972 4.0e-06 55.5 70 38.6
Rhsim12G0215000 Rhododendron simsii HOM05D002763 ORTHO05D002972 4.0e-06 55.5 84 35.7
THA.LOC104820007 Tarenaya hassleriana HOM05D002763 ORTHO05D002972 4.0e-06 55.5 80 33.8
Thecc.06G058900 Theobroma cacao HOM05D002763 ORTHO05D002972 4.0e-06 55.5 88 33.0
Zm00001eb178110 Zea mays HOM05D002763 ORTHO05D002972 4.0e-06 55.5 55 45.5
AL2G39300 Arabidopsis lyrata HOM05D002763 ORTHO05D002972 5.2e-06 55.1 71 38.0
BcaC06g36531 Brassica carinata HOM05D002763 ORTHO05D002972 5.2e-06 55.1 70 34.3
C07p03230 Brassica napus HOM05D002763 ORTHO05D002972 5.2e-06 55.1 70 34.3
BolC7t40720H Brassica oleracea HOM05D002763 ORTHO05D002972 5.2e-06 55.1 70 34.3
Cfa013449 Carpinus fangiana HOM05D002763 ORTHO05D002972 5.2e-06 55.1 68 33.8
Gohir.A10G002500 Gossypium hirsutum HOM05D002763 ORTHO05D002972 5.2e-06 55.1 118 29.7
Nitab4.5_0003757g0040 Nicotiana tabacum HOM05D002763 ORTHO05D002972 5.2e-06 55.1 94 29.8
Rhsim12G0214900 Rhododendron simsii HOM05D002763 ORTHO05D002972 5.2e-06 55.1 85 36.5
Aa31LG7G1280 Aethionema arabicum HOM05D002763 ORTHO05D002972 6.8e-06 54.7 82 34.1
Thhalv10019101m.g Eutrema salsugineum HOM05D002763 ORTHO05D002972 6.8e-06 54.7 85 35.3
Gorai.011G002900 Gossypium raimondii HOM05D002763 ORTHO05D002972 6.8e-06 54.7 107 30.8
HanXRQChr14g0438641 Helianthus annuus HOM05D002763 ORTHO05D002972 6.8e-06 54.7 79 30.4
Hma1.2p1_1326F.1_g275800 Hydrangea macrophylla HOM05D002763 ORTHO05D002972 6.8e-06 54.7 88 31.8
Peaxi162Scf00038g02522 Petunia axillaris HOM05D002763 ORTHO05D002972 6.8e-06 54.7 90 33.3
SalBow3G4096 Salvia bowleyana HOM05D002763 ORTHO05D002972 6.8e-06 54.7 114 27.2
Sp1g14980 Schrenkiella parvula HOM05D002763 ORTHO05D002972 6.8e-06 54.7 108 31.5
Hund29632 Selenicereus undatus HOM05D002763 ORTHO05D002972 6.8e-06 54.7 73 32.9
Aqoxy7G02792 Aquilegia oxysepala HOM05D002763 ORTHO05D002972 8.9e-06 54.3 120 31.7
A09p12300 Brassica napus HOM05D002763 ORTHO05D002972 8.9e-06 54.3 69 36.2
C09p14520 Brassica napus HOM05D002763 ORTHO05D002972 8.9e-06 54.3 69 36.2
BraA09t36874Z Brassica rapa HOM05D002763 ORTHO05D002972 8.9e-06 54.3 69 36.2
Cpa.g.c27842.1 Carica papaya HOM05D002763 ORTHO05D002972 8.9e-06 54.3 77 32.5
Cpa.g.sc155.21 Carica papaya HOM05D002763 ORTHO05D002972 8.9e-06 54.3 97 33.0
CsaV3_7G030470 Cucumis sativus L. HOM05D002763 ORTHO05D002972 8.9e-06 54.3 97 35.1
Hund29634 Selenicereus undatus HOM05D002763 ORTHO05D002972 8.9e-06 54.3 105 29.5


User provided reference genes

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