Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0053s0096 Marchantia polymorpha HOM05D005477 ORTHO05D006721 2.1e-42 175.3 85 100.0
Pp3c14_13800 Physcomitrium patens HOM05D005477 ORTHO05D006721 1.9e-27 125.6 85 69.4
Pp3c1_24730 Physcomitrium patens HOM05D005477 ORTHO05D006721 2.1e-23 112.1 77 64.9
CBR_g39209 Chara braunii HOM05D005477 ORTHO05D006721 2.8e-23 111.7 80 62.5
Lsat_1_v5_gn_2_59701 Lactuca sativa HOM05D005477 ORTHO05D006721 7.6e-21 103.6 84 54.8
GSVIVG01010508001 Vitis vinifera HOM05D005477 ORTHO05D006721 1.7e-20 102.4 76 59.2
HPP92_026455 Vanilla planifolia HOM05D005477 ORTHO05D006721 2.2e-20 102.1 75 60.0
AUR62042809 Chenopodium quinoa HOM05D005477 ORTHO05D006721 6.5e-20 100.5 77 57.1
PSO675G9273 Papaver somniferum HOM05D005477 ORTHO05D006721 8.4e-20 100.1 75 58.7
Cpa.g.sc2054.1 Carica papaya HOM05D005477 ORTHO05D006721 1.1e-19 99.8 77 57.1
DCAR_016635 Daucus carota HOM05D005477 ORTHO05D006721 1.1e-19 99.8 79 57.0
MD10G1225400 Malus domestica HOM05D005477 ORTHO05D006721 1.4e-19 99.4 76 55.3
Sc24g0002840 Simmondsia chinensis HOM05D005477 ORTHO05D006721 2.5e-19 98.6 77 54.5
Ah.08g212300 Amaranthus hybridus HOM05D003310 ORTHO05D006721 3.2e-19 98.2 76 56.6
AagrBONN_evm.TU.Sc2ySwM_362.2068 Anthoceros agrestis HOM05D005477 ORTHO05D006721 3.2e-19 98.2 75 57.3
EL10Ac7g17253 Beta vulgaris HOM05D005477 ORTHO05D006721 3.2e-19 98.2 76 57.9
AUR62040995 Chenopodium quinoa HOM05D005477 ORTHO05D006721 3.2e-19 98.2 76 56.6
MBI18_g21701_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 3.2e-19 98.2 77 57.1
ECA238G4156 Erigeron canadensis HOM05D005477 ORTHO05D006721 4.2e-19 97.8 75 57.3
HanXRQChr14g0439061 Helianthus annuus HOM05D005477 ORTHO05D006721 4.2e-19 97.8 75 57.3
MBI18_g35539_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 4.2e-19 97.8 75 58.7
Medtr4g094792 Medicago truncatula HOM05D005477 ORTHO05D006721 4.2e-19 97.8 80 53.8
vmacro03568 Vaccinium macrocarpon HOM05D005477 ORTHO05D006721 4.2e-19 97.8 77 57.1
DCAR_001258 Daucus carota HOM05D005477 ORTHO05D006721 5.5e-19 97.4 77 58.4
Manes.03G072100 Manihot esculenta HOM05D005477 ORTHO05D006721 5.5e-19 97.4 75 57.3
Thecc.02G001600 Theobroma cacao HOM05D005477 ORTHO05D006721 5.5e-19 97.4 75 57.3
ATR0763G104 Amborella trichopoda HOM05D005477 ORTHO05D006721 7.1e-19 97.1 76 56.6
COL.COLO4_25033 Corchorus olitorius HOM05D005477 ORTHO05D006721 7.1e-19 97.1 75 57.3
HanXRQChr09g0257861 Helianthus annuus HOM05D005477 ORTHO05D006721 7.1e-19 97.1 75 56.0
CiPaw.10G107900 Carya illinoinensis HOM05D005477 ORTHO05D006721 9.3e-19 96.7 77 54.5
MBI18_g18219_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 9.3e-19 96.7 75 57.3
Nn7g38416 Nelumbo nucifera HOM05D005477 ORTHO05D006721 9.3e-19 96.7 75 57.3
Aqoxy1G01389 Aquilegia oxysepala HOM05D005477 ORTHO05D006721 1.2e-18 96.3 75 57.3
ClCG01G025920 Citrullus lanatus HOM05D005477 ORTHO05D006721 1.2e-18 96.3 77 54.5
Ciclev10017510m.g Citrus clementina HOM05D005477 ORTHO05D006721 1.2e-18 96.3 75 56.0
CsaV3_6G053130 Cucumis sativus L. HOM05D005477 ORTHO05D006721 1.2e-18 96.3 77 53.2
DCAR_004357 Daucus carota HOM05D005477 ORTHO05D006721 1.2e-18 96.3 75 58.7
Oeu005613.1 Olea europaea HOM05D005477 ORTHO05D006721 1.2e-18 96.3 79 54.4
Ah.15g091860 Amaranthus hybridus HOM05D005477 ORTHO05D006721 1.6e-18 95.9 75 57.3
CANSAT35G0922 Cannabis sativa HOM05D005477 ORTHO05D006721 1.6e-18 95.9 73 60.3
Ca_18217_v3 Cicer arietinum L. HOM05D005477 ORTHO05D006721 1.6e-18 95.9 76 55.3
Dinv17881 Davidia involucrata HOM05D005477 ORTHO05D006721 1.6e-18 95.9 75 57.3
Aa31LG6G2560 Aethionema arabicum HOM05D005477 ORTHO05D006721 2.1e-18 95.5 82 48.8
Cfa001157 Carpinus fangiana HOM05D005477 ORTHO05D006721 2.1e-18 95.5 79 53.2
Haze_05194 Corylus avellana HOM05D005477 ORTHO05D006721 2.1e-18 95.5 79 53.2
Psat7g087320 Pisum sativum HOM05D005477 ORTHO05D006721 2.1e-18 95.5 76 55.3
PGR042G1348 Punica granatum HOM05D005477 ORTHO05D006721 2.1e-18 95.5 75 54.7
Hund08547 Selenicereus undatus HOM05D005477 ORTHO05D006721 2.1e-18 95.5 76 55.3
Zm00001eb321910 Zea mays HOM05D005477 ORTHO05D006721 2.1e-18 95.5 79 51.9
Atru.chr10.245 Acer truncatum HOM05D005477 ORTHO05D006721 2.7e-18 95.1 75 56.0
CiPaw.09G140100 Carya illinoinensis HOM05D005477 ORTHO05D006721 2.7e-18 95.1 75 54.7
Dinv01135 Davidia involucrata HOM05D005477 ORTHO05D006721 2.7e-18 95.1 75 56.0
MD05G1243500 Malus domestica HOM05D005477 ORTHO05D006721 2.7e-18 95.1 76 52.6
Prupe.4G120200 Prunus persica HOM05D005477 ORTHO05D006721 2.7e-18 95.1 76 52.6
Os07g0498300 Oryza sativa ssp. japonica HOM05D005477 ORTHO05D006721 3.5e-18 94.7 75 54.7
QL11p010970 Quercus lobata HOM05D005477 ORTHO05D006721 3.5e-18 94.7 82 51.2
Duzib132G0617 Durio zibethinus HOM05D005477 ORTHO05D006721 4.6e-18 94.4 75 54.7
RcHm_v2.0_Chr5g0021751 Rosa chinensis HOM05D005477 ORTHO05D006721 4.6e-18 94.4 73 58.9
Sabra01G0054000 Salix brachista HOM05D005477 ORTHO05D006721 4.6e-18 94.4 79 51.9
Sabra03G0113300 Salix brachista HOM05D005477 ORTHO05D006721 4.6e-18 94.4 75 54.7
TAR624G0209 Trochodendron aralioides HOM05D005477 ORTHO05D006721 4.6e-18 94.4 75 56.0
CSS0024293 Camellia sinensis var. sinensis HOM05D005477 ORTHO05D006721 6.0e-18 94.0 75 54.7
Oeu046914.1 Olea europaea HOM05D005477 ORTHO05D006721 6.0e-18 94.0 79 53.2
THA.LOC104811905 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 6.0e-18 94.0 75 56.0
MELO3C006999.2 Cucumis melo HOM05D005477 ORTHO05D006721 7.9e-18 93.6 75 53.3
FvH4_3g13280 Fragaria vesca HOM05D005477 ORTHO05D006721 7.9e-18 93.6 73 57.5
FAN11G1325 Fragaria x ananassa HOM05D005477 ORTHO05D006721 7.9e-18 93.6 73 57.5
FAN16G3377 Fragaria x ananassa HOM05D005477 ORTHO05D006721 7.9e-18 93.6 73 57.5
FAN21G3865 Fragaria x ananassa HOM05D005477 ORTHO05D006721 7.9e-18 93.6 73 57.5
A03p52320 Brassica napus HOM05D005477 ORTHO05D006721 1.0e-17 93.2 79 49.4
Eucgr.E04324 Eucalyptus grandis HOM05D005477 ORTHO05D006721 1.0e-17 93.2 75 54.7
Potri.001G074901 Populus trichocarpa HOM05D005477 ORTHO05D006721 1.0e-17 93.2 75 54.7
Cc09_g04680 Coffea canephora HOM05D005477 ORTHO05D006721 1.3e-17 92.8 75 56.0
Glyma.05G134900 Glycine max HOM05D005477 ORTHO05D006721 1.3e-17 92.8 73 53.4
Glyma.08G090100 Glycine max HOM05D005477 ORTHO05D006721 1.3e-17 92.8 73 53.4
CARHR226980 Cardamine hirsuta HOM05D005477 ORTHO05D006721 1.8e-17 92.4 75 53.3
Gohir.A12G050600 Gossypium hirsutum HOM05D005477 ORTHO05D006721 1.8e-17 92.4 75 53.3
Gohir.A12G050700 Gossypium hirsutum HOM05D005477 ORTHO05D006721 1.8e-17 92.4 75 53.3
Gohir.D12G048900 Gossypium hirsutum HOM05D005477 ORTHO05D006721 1.8e-17 92.4 75 53.3
Gohir.D12G049000 Gossypium hirsutum HOM05D005477 ORTHO05D006721 1.8e-17 92.4 75 53.3
Gorai.008G051800 Gossypium raimondii HOM05D005477 ORTHO05D006721 1.8e-17 92.4 75 53.3
Sed0007385 Sechium edule HOM05D005477 ORTHO05D006721 1.8e-17 92.4 75 53.3
C07p50750 Brassica napus HOM05D005477 ORTHO05D006721 2.3e-17 92.0 79 48.1
Potri.003G156301 Populus trichocarpa HOM05D005477 ORTHO05D006721 2.3e-17 92.0 75 54.7
THA.LOC104812922 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 2.3e-17 92.0 75 54.7
MSTRG.16378 Avicennia marina HOM05D005477 ORTHO05D006721 3.0e-17 91.7 75 56.0
FAN25G0727 Fragaria x ananassa HOM05D005477 ORTHO05D006721 3.0e-17 91.7 73 56.2
Gorai.008G051900 Gossypium raimondii HOM05D005477 ORTHO05D006721 3.0e-17 91.7 75 52.0
Lj4g0025411 Lotus japonicus HOM05D005477 ORTHO05D006721 3.0e-17 91.7 76 52.6
Zm00001eb105410 Zea mays HOM05D005477 ORTHO05D006721 3.0e-17 91.7 76 52.6
BolC7t45576H Brassica oleracea HOM05D005477 ORTHO05D006721 3.9e-17 91.3 79 48.1
Nitab4.5_0004786g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 3.9e-17 91.3 77 51.9
TPR.G27391 Trifolium pratense HOM05D005477 ORTHO05D006721 3.9e-17 91.3 76 51.3
A08p14650 Brassica napus HOM05D005477 ORTHO05D006721 6.7e-17 90.5 77 49.4
C03p82800 Brassica napus HOM05D005477 ORTHO05D006721 6.7e-17 90.5 77 49.4
BolC3t20562H Brassica oleracea HOM05D005477 ORTHO05D006721 6.7e-17 90.5 77 49.4
BraA08t33453Z Brassica rapa HOM05D005477 ORTHO05D006721 6.7e-17 90.5 77 49.4
Lalb_Chr13g0293041 Lupinus albus HOM05D005477 ORTHO05D006721 6.7e-17 90.5 76 50.0
Peaxi162Scf00700g00728 Petunia axillaris HOM05D005477 ORTHO05D006721 6.7e-17 90.5 75 52.0
BraA03t14308Z Brassica rapa HOM05D005477 ORTHO05D006721 8.7e-17 90.1 79 48.1
CDE12G0557 Ceratophyllum demersum HOM05D005477 ORTHO05D006721 8.7e-17 90.1 74 56.8
A01p11900 Brassica napus HOM05D005477 ORTHO05D006721 1.1e-16 89.7 77 49.4
BraA01t01132Z Brassica rapa HOM05D005477 ORTHO05D006721 1.1e-16 89.7 77 49.4
Thhalv10026700m.g Eutrema salsugineum HOM05D005477 ORTHO05D006721 1.5e-16 89.4 75 50.7
arahy.Tifrunner.gnm1.ann1.3VSL80 Arachis hypogaea HOM05D005477 ORTHO05D006721 1.9e-16 89.0 76 51.3
arahy.Tifrunner.gnm1.ann1.Z3SLP7 Arachis hypogaea HOM05D005477 ORTHO05D006721 1.9e-16 89.0 76 51.3
Peaxi162Scf00203g01320 Petunia axillaris HOM05D005477 ORTHO05D006721 1.9e-16 89.0 75 52.0
Phvul.002G187200 Phaseolus vulgaris HOM05D005477 ORTHO05D006721 1.9e-16 89.0 76 51.3
TWI38G0021 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 1.9e-16 89.0 75 48.0
BcaNung03492 Brassica carinata HOM05D005477 ORTHO05D006721 2.5e-16 88.6 75 49.3
Sp7g18580 Schrenkiella parvula HOM05D005477 ORTHO05D006721 2.5e-16 88.6 75 50.7
unitig_748.g7487 Utricularia gibba HOM05D005477 ORTHO05D006721 2.5e-16 88.6 75 52.0
AL7G33670 Arabidopsis lyrata HOM05D005477 ORTHO05D006721 3.3e-16 88.2 75 50.7
AT4G20150 Arabidopsis thaliana HOM05D005477 ORTHO05D006721 3.3e-16 88.2 75 50.7
Carub.0007s2098 Capsella rubella HOM05D005477 ORTHO05D006721 3.3e-16 88.2 75 50.7
Lalb_Chr07g0188151 Lupinus albus HOM05D005477 ORTHO05D006721 3.3e-16 88.2 76 50.0
BcaB03g11659 Brassica carinata HOM05D005477 ORTHO05D006721 4.3e-16 87.8 75 49.3
BcaC01g00657 Brassica carinata HOM05D005477 ORTHO05D006721 4.3e-16 87.8 75 49.3
BcaC06g30645 Brassica carinata HOM05D005477 ORTHO05D006721 4.3e-16 87.8 75 49.3
Nitab4.5_0001299g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 4.3e-16 87.8 75 52.0
Lalb_Chr07g0188141 Lupinus albus HOM05D005477 ORTHO05D006721 5.7e-16 87.4 77 48.1
BcaNung03709 Brassica carinata HOM05D005477 ORTHO05D006721 7.4e-16 87.0 75 49.3
Sopen10g001220 Solanum pennellii HOM05D005477 ORTHO05D006721 7.4e-16 87.0 75 52.0
CAN.G105.21 Capsicum annuum HOM05D005477 ORTHO05D006721 9.7e-16 86.7 82 46.3
CiPaw.06G130100 Carya illinoinensis HOM05D005477 ORTHO05D006721 9.7e-16 86.7 75 52.0
Solyc10g005230.3 Solanum lycopersicum HOM05D005477 ORTHO05D006721 2.2e-15 85.5 69 53.6
PGSC0003DMG400011262 Solanum tuberosum HOM05D005477 ORTHO05D006721 2.2e-15 85.5 75 50.7
SHI16868 Sapria himalayana HOM05D005477 ORTHO05D006721 2.8e-15 85.1 70 51.4
PSO675G4749 Papaver somniferum HOM05D005477 ORTHO05D006721 4.1e-14 81.3 75 50.7
Migut.M02030 Erythranthe guttata HOM05D005477 ORTHO05D006721 9.0e-14 80.1 72 51.4
TWI15G0858 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 9.0e-14 80.1 75 45.3
SMO134G0137 Selaginella moellendorffii HOM05D005477 ORTHO05D006721 5.9e-13 77.4 74 50.0
GSVIVG01010076001 Vitis vinifera HOM05D005477 ORTHO05D006721 1.2e-10 69.7 47 66.0
MCO10G264 Micromonas commoda HOM05D005477 ORTHO05D006721 7.9e-10 67.0 68 42.6
Oeu039133.1 Olea europaea HOM05D005477 ORTHO05D006721 3.9e-09 64.7 47 55.3


User provided reference genes

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