Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 3.9e-204 714.5 354 100.0
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 3.2e-105 386.0 352 56.5
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 1.1e-100 370.9 337 56.7
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.4e-100 369.8 339 55.5
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 6.9e-100 368.2 337 57.6
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.2e-99 367.5 345 57.7
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 1.5e-99 367.1 334 57.5
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 2.0e-99 366.7 351 55.8
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 5.9e-99 365.2 337 56.7
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 5.9e-99 365.2 337 57.0
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 7.6e-99 364.8 337 58.2
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 2.2e-98 363.2 340 55.6
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 2.9e-98 362.8 339 56.9
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 2.9e-98 362.8 337 56.1
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 3.8e-98 362.5 351 55.0
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 5.0e-98 362.1 337 57.0
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 6.5e-98 361.7 348 55.5
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 8.5e-98 361.3 337 57.3
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.1e-97 360.9 340 57.4
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.4e-97 360.5 338 57.7
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.4e-97 360.5 357 54.1
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 1.4e-97 360.5 336 54.8
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.4e-97 360.5 340 57.4
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.9e-97 360.1 343 55.1
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 3.2e-97 359.4 340 57.4
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.2e-97 359.4 340 55.0
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.2e-97 359.4 356 53.7
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 4.2e-97 359.0 341 55.4
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 4.2e-97 359.0 348 56.6
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 4.2e-97 359.0 336 54.8
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 4.2e-97 359.0 340 54.7
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 5.5e-97 358.6 336 55.4
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 5.5e-97 358.6 354 53.4
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 5.5e-97 358.6 336 56.0
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.5e-97 358.6 340 54.1
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 7.2e-97 358.2 337 55.5
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 7.2e-97 358.2 334 55.4
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 9.4e-97 357.8 336 55.7
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 9.4e-97 357.8 334 55.4
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 1.2e-96 357.5 337 55.5
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.2e-96 357.5 337 56.1
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 1.6e-96 357.1 334 56.9
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-96 357.1 340 54.1
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.6e-96 357.1 337 56.7
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 2.1e-96 356.7 336 55.1
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.1e-96 356.7 334 56.6
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 2.7e-96 356.3 335 55.2
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 3.6e-96 355.9 338 55.3
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.6e-96 355.9 340 53.8
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 3.6e-96 355.9 334 57.2
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 6.1e-96 355.1 348 54.3
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 6.1e-96 355.1 337 55.2
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 1.0e-95 354.4 336 54.8
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 1.0e-95 354.4 336 55.1
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 1.4e-95 354.0 336 55.4
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 1.4e-95 354.0 339 55.2
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 1.8e-95 353.6 336 53.6
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 2.3e-95 353.2 337 54.9
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 2.3e-95 353.2 334 55.1
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 3.0e-95 352.8 347 53.6
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 3.0e-95 352.8 334 55.1
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 3.9e-95 352.4 336 55.1
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.1e-95 352.1 337 54.0
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.1e-95 352.1 337 54.0
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 6.7e-95 351.7 334 54.2
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 6.7e-95 351.7 348 53.4
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.5e-94 350.5 336 54.5
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.5e-94 350.5 336 54.2
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.9e-94 350.1 336 53.9
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 2.5e-94 349.7 337 54.9
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 2.5e-94 349.7 334 54.5
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 2.5e-94 349.7 337 55.2
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 3.3e-94 349.4 336 54.8
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 3.3e-94 349.4 337 54.9
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 3.3e-94 349.4 334 54.5
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 3.3e-94 349.4 337 54.3
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 4.3e-94 349.0 337 56.1
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 4.3e-94 349.0 339 53.7
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 4.3e-94 349.0 353 53.8
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 5.7e-94 348.6 337 54.6
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 5.7e-94 348.6 336 54.8
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 9.7e-94 347.8 337 55.5
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 9.7e-94 347.8 334 54.5
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 9.7e-94 347.8 337 53.7
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 9.7e-94 347.8 336 54.8
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.3e-93 347.4 336 54.8
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 1.7e-93 347.1 334 54.2
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.7e-93 347.1 336 54.5
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 2.2e-93 346.7 336 53.9
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.2e-93 346.7 336 54.8
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 4.8e-93 345.5 337 54.0
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 6.3e-93 345.1 336 54.8
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 6.3e-93 345.1 367 51.5
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 1.4e-92 344.0 334 53.9
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 2.4e-92 343.2 334 54.8
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 5.3e-92 342.0 276 60.9
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 6.9e-92 341.7 334 53.3
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 6.9e-92 341.7 337 52.8
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 1.5e-91 340.5 336 54.2
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.5e-91 340.5 235 68.1
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 1.5e-91 340.5 338 53.0
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.5e-91 340.5 336 52.1
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 2.6e-91 339.7 340 51.8
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 3.4e-91 339.3 334 54.8
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 8.5e-90 334.7 354 52.0
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 8.5e-90 334.7 303 58.7
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 7.2e-89 331.6 235 66.8
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 9.4e-89 331.3 322 53.7
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 1.8e-87 327.0 319 53.6
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 3.9e-87 325.9 367 49.0
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.1e-86 324.3 214 69.2
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 9.7e-86 321.2 337 51.0
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 5.3e-84 315.5 359 50.1
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 9.1e-84 314.7 218 67.9
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 3.4e-83 312.8 336 49.4
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 7.7e-83 311.6 214 69.2
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.7e-82 310.5 374 48.4
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.4e-81 307.4 302 53.6
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.0e-76 288.5 340 47.4
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 3.8e-74 282.7 337 49.0
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 5.0e-74 282.3 337 47.2
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 4.0e-71 272.7 255 52.2
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 5.7e-70 268.9 192 67.7
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 6.3e-69 265.4 208 63.9
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.8e-68 263.8 367 42.2
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.5e-67 259.6 337 46.3
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 1.2e-64 251.1 306 47.1
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 4.7e-56 222.6 149 68.5
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 1.5e-54 217.6 347 40.6
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 1.5e-54 217.6 251 48.6
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 3.4e-54 216.5 146 69.9
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.7e-53 214.2 170 65.9
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.7e-50 204.1 135 69.6
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 9.8e-46 188.3 231 42.0
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-44 184.5 127 66.9
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-39 167.5 112 68.8
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.3e-39 167.2 211 46.9
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 5.4e-36 156.0 118 64.4
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 3.5e-35 153.3 203 43.8
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-34 151.8 114 61.4
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-34 151.4 114 63.2
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.7e-34 151.0 114 63.2
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.7e-34 151.0 114 63.2
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.9e-34 149.8 114 62.3
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.1e-34 149.4 114 63.2
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.1e-34 149.4 114 60.5
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.6e-34 149.1 114 62.3
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-33 147.5 114 62.3
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.3e-33 145.6 93 72.0
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.1e-32 142.1 106 61.3
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 8.3e-29 132.1 190 41.6
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 1.7e-26 124.4 93 62.4
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 4.3e-25 119.8 93 58.1
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-22 111.3 240 33.8
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.9e-21 107.1 214 36.0
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.9e-20 104.4 80 60.0
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 3.2e-20 103.6 91 54.9
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 3.2e-20 103.6 91 54.9
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 3.9e-18 96.7 66 68.2
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.3e-17 93.6 62 67.7
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.3e-17 92.4 62 67.7
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.1e-15 88.6 74 60.8
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 9.9e-14 82.0 73 53.4
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.6e-11 74.7 52 63.5
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 1.6e-11 74.7 52 63.5
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.7e-11 73.9 47 66.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.6e-11 73.2 52 61.5
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 4.6e-11 73.2 52 61.5
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 3.1e-07 60.5 63 46.0
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.5e-06 56.6 82 41.5


User provided reference genes

Program Settings