Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 0.0e+00 1504.6 849 100.0
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 2.5e-116 424.1 738 41.2
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 2.6e-113 414.1 827 40.3
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 5.7e-108 396.4 813 38.9
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 8.2e-107 392.5 824 37.3
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 7.0e-106 389.4 762 39.8
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 6.1e-102 376.3 834 37.8
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 8.0e-102 375.9 860 37.2
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 3.3e-100 370.5 868 36.8
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 2.2e-99 367.9 849 37.3
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 8.2e-99 365.9 726 38.3
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 1.1e-98 365.5 738 38.6
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 3.1e-98 364.0 796 37.2
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 7.0e-98 362.8 860 36.4
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.6e-97 361.7 734 38.3
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 1.0e-96 359.0 846 36.8
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.7e-96 358.2 850 36.2
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.7e-96 358.2 736 38.5
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 5.0e-96 356.7 862 36.8
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.5e-96 356.3 850 35.8
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 6.5e-96 356.3 723 39.4
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.9e-95 354.8 848 36.2
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 1.9e-95 354.8 863 36.0
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.9e-95 354.8 723 37.6
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 3.2e-95 354.0 380 55.8
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 5.5e-95 353.2 741 38.2
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 9.4e-95 352.4 811 36.6
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.6e-94 351.7 868 35.1
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 2.1e-94 351.3 734 36.5
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 3.6e-94 350.5 863 35.9
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.7e-94 350.1 740 38.6
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 6.1e-94 349.7 742 36.7
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 1.4e-93 348.6 798 37.0
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 1.8e-93 348.2 844 37.4
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.3e-93 347.8 773 38.2
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 2.6e-92 344.4 820 36.7
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 3.4e-92 344.0 781 35.7
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 9.8e-92 342.4 742 36.7
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 2.8e-91 340.9 864 35.4
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.8e-91 340.1 728 38.6
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 4.8e-91 340.1 750 37.1
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 4.8e-91 340.1 780 35.6
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 6.3e-91 339.7 739 36.9
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.8e-90 338.2 874 35.5
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.1e-90 337.4 758 36.3
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 4.1e-90 337.0 841 35.7
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 7.0e-90 336.3 736 37.9
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.6e-89 335.1 864 36.1
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.0e-89 334.7 748 36.4
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 2.0e-89 334.7 823 34.8
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.5e-89 334.0 859 34.8
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 5.9e-89 333.2 734 37.3
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 1.3e-88 332.0 830 35.9
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 1.7e-88 331.6 874 34.4
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 3.8e-88 330.5 853 34.6
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 5.0e-88 330.1 721 36.5
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.9e-87 328.2 744 36.2
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 2.5e-87 327.8 740 36.2
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 4.2e-87 327.0 846 33.8
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 5.5e-87 326.6 863 35.2
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 1.2e-86 325.5 865 34.9
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 2.1e-86 324.7 737 35.7
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.0e-85 322.4 737 35.5
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 3.0e-85 320.9 825 35.0
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 6.8e-85 319.7 844 34.2
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.2e-84 318.9 813 34.1
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 2.6e-84 317.8 807 37.7
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 4.4e-84 317.0 870 32.6
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 5.7e-84 316.6 803 35.0
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 2.2e-83 314.7 893 34.4
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 2.8e-83 314.3 750 34.8
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 3.7e-83 313.9 728 35.7
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 1.4e-82 312.0 782 34.4
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.4e-82 312.0 745 35.0
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 4.1e-82 310.5 750 35.5
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 9.1e-82 309.3 864 33.1
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 1.2e-81 308.9 730 35.1
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 1.2e-81 308.9 748 35.8
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.5e-81 307.0 761 34.0
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 7.7e-81 306.2 802 37.4
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 2.3e-80 304.7 809 35.6
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 8.6e-80 302.8 379 53.0
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.5e-79 301.2 722 34.9
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 5.5e-79 300.1 740 35.5
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 5.5e-79 300.1 737 35.1
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 2.1e-78 298.1 849 34.3
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 3.6e-78 297.4 833 33.5
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 4.7e-78 297.0 833 33.0
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.3e-77 294.7 556 38.7
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 4.0e-77 293.9 741 33.9
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 6.8e-77 293.1 725 34.9
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 2.6e-76 291.2 531 41.2
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 3.4e-76 290.8 890 32.9
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 3.2e-74 284.3 785 35.0
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.1e-74 283.9 738 34.6
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 5.4e-74 283.5 733 34.4
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.6e-73 282.0 800 32.9
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 4.6e-73 280.4 730 33.4
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 7.8e-73 279.6 729 34.6
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 2.3e-72 278.1 729 34.8
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 5.0e-72 276.9 741 32.8
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 6.6e-72 276.6 742 33.8
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 6.6e-72 276.6 742 33.8
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 6.6e-72 276.6 720 34.3
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 8.6e-72 276.2 728 34.5
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.5e-71 275.4 859 31.8
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 2.5e-71 274.6 587 39.5
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 5.6e-71 273.5 727 34.9
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 2.1e-70 271.6 751 33.3
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.8e-70 271.2 720 33.2
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 8.0e-70 269.6 734 33.9
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 1.4e-69 268.9 727 33.1
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.3e-69 268.1 727 33.1
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 5.2e-69 266.9 723 33.6
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.5e-68 265.4 719 33.4
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 2.6e-68 264.6 740 33.6
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 1.3e-67 262.3 735 33.3
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 4.9e-67 260.4 741 33.3
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 4.1e-66 257.3 757 32.4
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 3.5e-65 254.2 805 31.3
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 4.6e-65 253.8 284 51.8
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.0e-64 252.7 746 33.2
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.7e-64 251.9 674 34.1
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 6.6e-64 250.0 715 32.9
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 5.6e-63 246.9 277 53.4
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 1.6e-62 245.4 796 32.4
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 6.2e-62 243.4 873 30.8
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.4e-61 242.3 874 30.0
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 2.0e-60 238.4 678 33.5
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.3e-59 235.7 830 31.1
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.3e-59 235.7 702 32.5
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 2.4e-58 231.5 742 30.7
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 5.4e-58 230.3 320 46.2
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 3.3e-55 221.1 736 31.2
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 6.2e-54 216.9 645 31.9
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.1e-53 216.1 657 31.8
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 2.3e-53 214.9 645 32.2
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 7.6e-52 209.9 730 30.3
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 3.9e-48 197.6 847 30.7
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-46 192.6 738 30.4
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 1.7e-43 182.2 260 46.2
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 4.6e-41 174.1 283 42.4
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 6.6e-32 143.7 157 54.1
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 1.9e-26 125.6 622 28.0
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 1.2e-25 122.9 339 33.0
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.0e-24 119.8 362 30.4
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.8e-24 119.0 392 32.9
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 1.8e-21 109.0 136 49.3
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 6.5e-19 100.5 282 32.6
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 9.3e-18 96.7 80 62.5
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-17 96.3 142 43.7
CBR_g40298 Chara braunii HOM05D003721 ORTHO05D004303 2.3e-16 92.0 360 28.9
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.5e-15 89.4 222 32.0
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 2.4e-13 82.0 181 40.9
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 3.1e-13 81.6 137 38.7
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 4.1e-13 81.3 406 27.8
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 1.2e-12 79.7 205 31.7
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.5e-11 73.9 66 54.5
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 3.5e-09 68.2 104 43.3
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 1.0e-08 66.6 176 33.5
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.8e-08 65.9 119 35.3
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 2.3e-08 65.5 120 35.0


User provided reference genes

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