Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 2.0e-278 961.8 497 100.0
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 3.1e-90 336.7 503 40.6
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.8e-78 297.0 425 41.2
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 1.2e-76 291.6 430 40.0
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 5.7e-76 289.3 493 37.1
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 7.5e-76 288.9 430 39.5
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 9.2e-74 282.0 431 40.6
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 2.7e-73 280.4 497 36.0
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 4.5e-73 279.6 496 36.7
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 5.9e-73 279.3 497 36.6
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 7.8e-73 278.9 501 36.1
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.3e-72 278.1 501 35.7
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 2.9e-72 276.9 436 39.4
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.5e-71 274.6 426 39.4
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.5e-71 274.6 502 36.1
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 4.3e-71 273.1 429 38.5
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 5.6e-71 272.7 436 39.0
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 9.5e-71 271.9 431 38.5
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 2.8e-70 270.4 424 37.7
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 3.6e-70 270.0 495 36.8
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 3.6e-70 270.0 425 37.9
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 3.6e-70 270.0 430 39.1
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 6.8e-69 265.8 491 35.6
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 1.2e-68 265.0 422 37.2
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.5e-68 264.6 429 38.9
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 1.5e-68 264.6 425 37.6
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 1.5e-68 264.6 431 38.1
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 4.4e-68 263.1 494 35.2
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 5.7e-68 262.7 425 38.6
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 5.7e-68 262.7 444 39.0
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 5.7e-68 262.7 433 37.6
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 7.5e-68 262.3 453 34.7
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 7.5e-68 262.3 416 40.1
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 1.7e-67 261.2 416 38.5
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 1.7e-67 261.2 416 38.5
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 1.7e-67 261.2 431 38.3
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 1.7e-67 261.2 433 38.1
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 2.9e-67 260.4 427 37.9
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 2.9e-67 260.4 440 37.7
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 2.9e-67 260.4 468 36.5
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 3.7e-67 260.0 504 35.1
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 3.7e-67 260.0 438 37.7
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 3.7e-67 260.0 436 38.1
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 6.4e-67 259.2 504 34.9
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 1.4e-66 258.1 400 40.2
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 1.8e-66 257.7 437 36.8
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.8e-66 257.7 492 34.1
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 4.1e-66 256.5 416 38.7
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 5.4e-66 256.1 488 34.8
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 7.0e-66 255.8 426 37.1
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 7.0e-66 255.8 402 39.6
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 7.0e-66 255.8 500 33.8
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 7.0e-66 255.8 428 36.9
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 9.2e-66 255.4 496 34.1
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 9.2e-66 255.4 398 39.7
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 9.2e-66 255.4 432 36.6
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 9.2e-66 255.4 446 36.5
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 1.2e-65 255.0 435 36.3
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 1.6e-65 254.6 505 34.9
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 2.0e-65 254.2 432 36.6
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 2.7e-65 253.8 507 34.5
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 3.5e-65 253.4 493 35.3
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 5.9e-65 252.7 436 35.8
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 5.9e-65 252.7 427 36.8
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 7.8e-65 252.3 518 34.0
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 1.0e-64 251.9 488 36.5
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 1.3e-64 251.5 500 34.8
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.3e-64 251.5 500 36.8
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.3e-64 251.5 500 35.4
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 1.7e-64 251.1 430 36.3
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 1.7e-64 251.1 426 36.6
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 3.0e-64 250.4 425 36.9
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 3.0e-64 250.4 430 37.9
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 3.0e-64 250.4 429 36.4
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 3.9e-64 250.0 431 37.8
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 3.9e-64 250.0 500 35.2
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 5.0e-64 249.6 498 34.5
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 1.5e-63 248.1 507 33.1
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 3.3e-63 246.9 498 34.9
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 3.3e-63 246.9 439 35.3
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 3.3e-63 246.9 496 34.5
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 4.3e-63 246.5 457 36.8
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 9.5e-63 245.4 505 34.3
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 6.2e-62 242.7 411 38.4
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 6.8e-61 239.2 410 38.5
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 8.9e-61 238.8 342 42.4
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 2.0e-60 237.7 431 36.9
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 5.8e-60 236.1 427 36.3
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 6.4e-59 232.6 399 36.6
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 8.3e-59 232.3 429 35.9
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 2.4e-58 230.7 425 36.0
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 7.8e-57 225.7 423 34.8
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 7.8e-57 225.7 343 39.7
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 5.0e-56 223.0 348 39.7
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 8.6e-56 222.2 427 34.2
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 2.5e-55 220.7 428 34.1
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.6e-54 218.0 499 33.1
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.6e-54 216.9 339 39.8
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 6.2e-54 216.1 402 37.1
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 2.0e-52 211.1 353 39.1
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 2.1e-49 201.1 500 32.0
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 2.7e-49 200.7 392 32.9
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 2.5e-47 194.1 425 33.2
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 3.3e-47 193.7 254 41.7
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 3.6e-46 190.3 395 35.4
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 6.2e-46 189.5 407 33.9
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 1.7e-43 181.4 399 34.3
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.9e-42 177.9 274 43.4
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 4.6e-41 173.3 348 35.9
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 2.1e-38 164.5 273 37.7
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.1e-37 162.2 362 34.8
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 9.0e-37 159.1 192 47.4
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 3.3e-31 140.6 500 28.0
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 6.7e-24 116.3 139 45.3
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 1.1e-23 115.5 165 38.2
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 3.3e-23 114.0 134 47.0
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 4.5e-20 103.6 139 45.3
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 7.6e-20 102.8 109 45.9
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.9e-19 100.9 168 35.1
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 3.2e-18 97.4 138 42.8
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 7.1e-18 96.3 495 23.2
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 4.6e-17 93.6 182 33.0
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 7.9e-17 92.8 282 27.3
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 5.1e-16 90.1 335 25.4
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 6.7e-16 89.7 204 32.4
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 3.8e-11 73.9 190 29.5
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 1.0e-08 65.9 173 30.1
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 1.5e-07 62.0 140 30.7
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 6.3e-06 56.6 109 37.6


User provided reference genes

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