Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 0.0e+00 1427.5 693 100.0
Mapoly0108s0037 Marchantia polymorpha HOM05D029023 ORTHO05D030122 0.0e+00 1282.3 635 97.8
Mapoly0555s0001 Marchantia polymorpha HOM05D029023 ORTHO05D030122 8.3e-166 588.2 289 98.3
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.2e-33 148.3 255 34.9
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.7e-31 141.4 290 32.4
Mapoly0086s0070 Marchantia polymorpha HOM05D029023 ORTHO05D030122 1.6e-28 132.1 97 69.1
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 8.1e-28 129.8 283 33.2
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.1e-27 129.4 266 33.8
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.1e-27 129.4 291 32.0
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.1e-27 127.9 293 31.4
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.5e-26 125.6 296 31.4
Mapoly0010s0128 Marchantia polymorpha HOM05D000005 ORTHO05D000239 4.9e-25 120.6 246 30.9
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.2e-24 117.9 311 29.6
Mapoly0110s0039 Marchantia polymorpha HOM05D011080 ORTHO05D000239 4.2e-24 117.5 265 30.6
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.5e-23 114.4 280 31.1
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.7e-22 112.1 283 30.4
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.7e-22 112.1 293 29.4
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.9e-22 110.9 294 29.9
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.9e-22 110.9 303 31.4
Mapoly0080s0029 Marchantia polymorpha HOM05D011080 ORTHO05D000239 8.7e-22 109.8 208 35.1
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.5e-21 108.2 299 28.8
Mapoly2448s0001 Marchantia polymorpha HOM05D020945 ORTHO05D251686 4.3e-21 107.5 205 34.1
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 9.6e-21 106.3 358 27.7
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.3e-20 105.9 272 30.9
Mapoly0020s0126 Marchantia polymorpha HOM05D000242 ORTHO05D000700 2.8e-20 104.8 262 29.8
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 1.8e-19 102.1 265 30.2
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.9e-19 100.1 200 33.0
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 1.2e-18 99.4 290 30.0
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.7e-17 95.5 160 36.2
Mapoly0067s0037 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.2e-17 95.1 287 28.2
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.4e-17 93.6 305 27.2
Mapoly0074s0030 Marchantia polymorpha HOM05D011080 ORTHO05D254173 4.2e-16 90.9 277 30.0
Mapoly0120s0017 Marchantia polymorpha HOM05D011080 ORTHO05D000239 5.5e-16 90.5 231 29.9
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 5.5e-16 90.5 206 30.6
Mapoly0147s0044 Marchantia polymorpha HOM05D000242 ORTHO05D000700 9.3e-16 89.7 304 27.0
Mapoly0108s0045 Marchantia polymorpha HOM05D020945 ORTHO05D000713 2.1e-15 88.6 302 28.1
Mapoly0147s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253211 2.3e-14 85.1 251 28.7
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 3.9e-14 84.3 154 31.8
Mapoly0120s0038 Marchantia polymorpha HOM05D011080 ORTHO05D256860 6.7e-14 83.6 231 31.2
Mapoly0032s0031 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.3e-12 79.3 288 27.8
Mapoly0041s0073 Marchantia polymorpha HOM05D011080 ORTHO05D255563 1.3e-12 79.3 215 32.1
Mapoly0119s0056 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.1e-12 78.6 300 25.0
Mapoly0071s0031 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.7e-12 77.8 288 25.3
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 1.1e-11 76.3 270 25.9
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 1.1e-11 76.3 270 25.9
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 3.1e-11 74.7 270 25.6
Mapoly0062s0059 Marchantia polymorpha HOM05D000005 ORTHO05D000239 4.0e-11 74.3 176 33.0
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 2.6e-10 71.6 254 25.2
Mapoly0120s0044 Marchantia polymorpha HOM05D011080 ORTHO05D253140 3.4e-10 71.2 221 29.4
Mapoly0116s0050 Marchantia polymorpha HOM05D011080 ORTHO05D252286 4.5e-10 70.9 287 25.4
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 1.3e-09 69.3 256 25.4
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.9e-09 68.2 276 27.2
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 1.4e-08 65.9 256 25.4
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 1.4e-08 65.9 276 23.2
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 1.4e-08 65.9 256 25.4
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 2.5e-08 65.1 257 25.3
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 2.5e-08 65.1 278 24.5
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 2.5e-08 65.1 299 24.1
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 3.2e-08 64.7 285 22.8
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 5.5e-08 63.9 263 28.1
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 5.5e-08 63.9 250 25.2
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 5.5e-08 63.9 277 24.2
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 5.5e-08 63.9 256 24.6
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 5.5e-08 63.9 269 25.3
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 5.5e-08 63.9 258 25.2
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 7.1e-08 63.5 300 24.0
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 7.1e-08 63.5 278 24.1
Mapoly0120s0043 Marchantia polymorpha HOM05D011080 ORTHO05D255325 9.3e-08 63.2 251 26.3
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 9.3e-08 63.2 169 29.0
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 1.2e-07 62.8 256 24.6
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 1.2e-07 62.8 271 24.7
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 1.6e-07 62.4 262 25.2
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 1.6e-07 62.4 256 24.2
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 1.6e-07 62.4 266 25.2
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 2.1e-07 62.0 213 26.3
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 2.1e-07 62.0 270 24.1
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 2.1e-07 62.0 255 23.9
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 2.7e-07 61.6 264 26.5
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 2.7e-07 61.6 261 24.1
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 2.7e-07 61.6 256 25.4
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 2.7e-07 61.6 167 25.7
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 2.7e-07 61.6 168 26.2
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 2.7e-07 61.6 256 24.2
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 3.5e-07 61.2 262 24.8
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 3.5e-07 61.2 262 24.8
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 4.6e-07 60.8 173 27.2
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 4.6e-07 60.8 262 24.8
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 4.6e-07 60.8 262 24.8
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 4.6e-07 60.8 257 24.5
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 6.0e-07 60.5 257 24.5
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 6.0e-07 60.5 167 26.3
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 6.0e-07 60.5 263 25.9
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 6.0e-07 60.5 220 25.0
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 7.9e-07 60.1 262 25.2
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 7.9e-07 60.1 232 26.3
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 1.0e-06 59.7 257 23.7
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 1.0e-06 59.7 161 29.8
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 1.0e-06 59.7 174 26.4
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 1.3e-06 59.3 256 24.2
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 1.3e-06 59.3 255 23.1
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 1.8e-06 58.9 184 26.1
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 1.8e-06 58.9 275 23.6
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 1.8e-06 58.9 168 28.6
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 2.3e-06 58.5 257 24.1
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 2.3e-06 58.5 260 24.2
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 2.3e-06 58.5 270 23.3
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 2.3e-06 58.5 168 27.4
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 3.0e-06 58.2 259 25.1
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 3.0e-06 58.2 167 25.1
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 3.0e-06 58.2 256 24.2
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 3.0e-06 58.2 167 25.7
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 3.0e-06 58.2 257 24.9
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 3.0e-06 58.2 257 24.5
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 3.9e-06 57.8 256 23.8
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 3.9e-06 57.8 290 23.8
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 3.9e-06 57.8 256 23.8
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 3.9e-06 57.8 176 27.3
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 5.1e-06 57.4 256 24.2
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 5.1e-06 57.4 167 24.0
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 6.7e-06 57.0 256 24.6
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 6.7e-06 57.0 260 24.2
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 6.7e-06 57.0 262 26.7
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 8.7e-06 56.6 256 23.4
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 8.7e-06 56.6 256 23.4
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 8.7e-06 56.6 261 25.3


User provided reference genes

Program Settings