Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 1.5e-286 988.8 498 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.3e-245 852.8 496 83.1
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 8.4e-245 850.1 439 91.6
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 1.1e-244 849.7 471 89.2
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 1.4e-244 849.4 439 91.6
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 1.9e-244 849.0 439 91.3
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 2.5e-244 848.6 439 91.3
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 2.5e-244 848.6 439 91.3
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 3.2e-244 848.2 439 91.3
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 5.5e-244 847.4 439 91.3
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 5.5e-244 847.4 439 91.6
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 7.1e-244 847.0 439 91.3
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 7.1e-244 847.0 439 91.3
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 9.3e-244 846.7 439 91.1
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 9.3e-244 846.7 439 91.1
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 9.3e-244 846.7 439 91.1
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 9.3e-244 846.7 439 91.1
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 9.3e-244 846.7 439 91.3
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 1.2e-243 846.3 445 90.1
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.2e-243 846.3 439 91.1
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 1.6e-243 845.9 439 90.9
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 2.1e-243 845.5 439 91.1
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 2.1e-243 845.5 439 90.7
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 2.7e-243 845.1 486 86.4
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.7e-243 845.1 437 91.3
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.5e-243 844.7 498 85.7
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 3.5e-243 844.7 493 85.6
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 3.5e-243 844.7 493 85.8
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 3.5e-243 844.7 438 90.9
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 3.5e-243 844.7 493 83.6
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 4.6e-243 844.3 439 90.9
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 6.1e-243 844.0 438 90.9
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 6.1e-243 844.0 440 90.5
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 6.1e-243 844.0 439 90.9
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 6.1e-243 844.0 438 90.9
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 6.1e-243 844.0 438 90.9
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 7.9e-243 843.6 468 88.9
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 1.0e-242 843.2 493 85.2
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.0e-242 843.2 438 90.6
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.0e-242 843.2 468 89.1
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 1.0e-242 843.2 439 90.9
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.0e-242 843.2 439 90.4
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.0e-242 843.2 489 85.5
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.3e-242 842.8 439 90.9
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.3e-242 842.8 439 90.4
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 1.3e-242 842.8 439 90.9
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.3e-242 842.8 445 89.7
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 1.8e-242 842.4 492 84.8
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.8e-242 842.4 439 90.9
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.8e-242 842.4 477 86.4
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.8e-242 842.4 439 90.9
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 2.3e-242 842.0 438 91.3
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.3e-242 842.0 439 90.7
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.3e-242 842.0 439 90.9
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.3e-242 842.0 489 85.7
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.0e-242 841.6 440 90.5
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 3.9e-242 841.3 439 90.7
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 5.1e-242 840.9 437 89.7
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 5.1e-242 840.9 439 90.7
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 5.1e-242 840.9 481 85.7
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 5.1e-242 840.9 433 90.1
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 6.7e-242 840.5 466 88.0
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 6.7e-242 840.5 466 88.0
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 6.7e-242 840.5 439 90.2
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 6.7e-242 840.5 439 90.4
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 6.7e-242 840.5 439 90.7
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 6.7e-242 840.5 438 89.7
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 6.7e-242 840.5 491 86.8
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 8.7e-242 840.1 489 84.3
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 8.7e-242 840.1 439 90.4
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 8.7e-242 840.1 489 85.9
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 8.7e-242 840.1 441 89.3
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 8.7e-242 840.1 439 89.7
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.5e-241 839.3 439 90.4
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 1.5e-241 839.3 439 90.0
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 1.5e-241 839.3 489 85.7
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 1.9e-241 839.0 438 90.0
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 2.5e-241 838.6 488 83.8
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 3.3e-241 838.2 439 90.4
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.3e-241 838.2 437 90.2
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 3.3e-241 838.2 489 85.5
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 4.3e-241 837.8 439 90.7
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 4.3e-241 837.8 488 83.6
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.3e-241 837.8 497 85.1
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 4.3e-241 837.8 439 90.4
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 4.3e-241 837.8 436 90.6
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 4.3e-241 837.8 497 84.9
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 5.7e-241 837.4 438 90.2
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 5.7e-241 837.4 493 83.8
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 5.7e-241 837.4 439 90.0
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 7.4e-241 837.0 436 90.4
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 9.7e-241 836.6 438 90.0
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 9.7e-241 836.6 439 90.2
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 9.7e-241 836.6 438 90.0
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.3e-240 836.3 466 87.1
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 1.6e-240 835.9 486 85.4
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 2.2e-240 835.5 489 84.9
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 2.2e-240 835.5 438 89.7
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 3.7e-240 834.7 488 84.8
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 3.7e-240 834.7 439 89.7
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 4.8e-240 834.3 438 89.7
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 4.8e-240 834.3 430 90.5
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 4.8e-240 834.3 429 90.2
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 6.3e-240 833.9 493 83.6
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 8.2e-240 833.6 486 83.7
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 8.2e-240 833.6 439 89.7
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 1.1e-239 833.2 489 83.6
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 1.4e-239 832.8 431 90.5
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 6.9e-239 830.5 495 84.4
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 1.2e-238 829.7 493 83.4
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 2.6e-238 828.6 430 89.8
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 5.0e-237 824.3 492 83.1
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 9.4e-236 820.1 433 87.8
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 3.0e-234 815.1 431 87.5
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 2.4e-231 805.4 410 91.2
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 9.1e-231 803.5 431 85.6
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.1e-225 786.6 410 91.0
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 3.3e-225 785.0 409 91.0
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 3.3e-225 785.0 430 85.3
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 4.4e-225 784.6 417 89.2
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.7e-224 782.7 416 89.2
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 4.1e-223 778.1 409 89.5
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 2.6e-222 775.4 427 83.1
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 1.6e-219 766.1 428 82.9
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 9.1e-215 750.4 420 80.2
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 5.0e-213 744.6 386 91.5
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 4.5e-206 721.5 477 75.9
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 3.5e-198 695.3 354 91.5
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.4e-191 673.3 343 91.8
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.4e-191 673.3 466 75.1
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 1.6e-182 643.3 395 74.2
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.5e-182 642.1 346 88.2
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 1.5e-177 626.7 319 90.6
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 4.9e-168 595.1 317 89.6
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 9.3e-159 564.3 438 66.0
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 6.9e-154 548.1 282 89.7
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.8e-152 542.3 439 64.5
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.9e-152 542.0 438 64.4
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.5e-150 535.8 438 63.9
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 9.3e-143 511.1 279 86.4
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 9.3e-135 484.6 351 70.1
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.9e-124 450.3 278 74.8
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.7e-107 392.9 203 90.6
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.5e-95 354.4 176 92.6
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 7.2e-95 352.1 191 86.9
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 7.2e-87 325.5 174 90.2
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 6.8e-85 318.9 171 90.1
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 8.6e-72 275.4 146 89.0
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 5.4e-66 256.1 438 38.1
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 1.2e-65 255.0 146 82.2
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 4.7e-62 243.0 127 86.6
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 1.5e-60 238.0 129 89.9
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 7.1e-58 229.2 113 91.2
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.3e-56 224.2 259 45.9
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 6.6e-48 196.1 100 90.0
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 4.3e-47 193.4 97 89.7
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.2e-46 191.8 102 87.3
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.4e-34 151.0 77 87.0
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 4.6e-33 146.7 102 73.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 1.4e-29 135.2 79 84.8
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 1.4e-29 135.2 79 84.8
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 2.2e-27 127.9 196 37.2
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 5.5e-26 123.2 71 88.7
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.5e-25 120.6 65 86.2
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.5e-25 120.6 65 86.2
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.3e-24 118.6 72 81.9
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.6e-23 113.2 69 79.7
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 9.6e-23 112.5 59 81.4
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.1e-22 111.3 68 80.9
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.1e-22 111.3 84 65.5
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.8e-22 110.2 68 79.4
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 3.8e-19 100.5 47 93.6
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.2e-18 97.4 67 64.2
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.1e-17 94.7 48 89.6
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 5.9e-12 76.6 69 56.5
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 1.7e-11 75.1 72 54.2
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 3.8e-11 73.9 72 54.2
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 1.4e-10 72.0 168 32.1
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 9.3e-10 69.3 61 59.0


User provided reference genes

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