Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 0.0e+00 1164.4 602 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 3.1e-92 343.6 594 38.2
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.3e-84 316.2 583 38.6
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.3e-84 316.2 583 38.6
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-75 288.5 577 35.5
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.6e-72 278.1 627 34.3
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.0e-71 273.9 574 34.3
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.9e-66 257.3 584 34.6
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.1e-65 255.4 494 35.6
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.4e-63 248.4 540 34.3
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.2e-61 241.1 577 33.4
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.6e-59 235.0 582 33.5
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.7e-50 204.9 584 29.5
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.8e-47 194.9 489 32.5
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.6e-38 164.5 563 28.1
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.0e-35 154.8 574 27.9
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 7.8e-35 152.9 400 30.2
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 2.5e-33 147.9 348 30.7
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 2.5e-33 147.9 371 29.1
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 7.3e-33 146.4 357 30.3
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 4.7e-32 143.7 348 30.2
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 8.0e-32 142.9 324 31.2
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.4e-31 142.1 395 27.6
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 1.8e-31 141.7 385 28.6
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 2.3e-31 141.4 387 29.5
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 4.0e-31 140.6 310 31.6
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 4.0e-31 140.6 346 30.9
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 6.8e-31 139.8 369 28.5
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 1.2e-30 139.0 313 31.3
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.0e-30 138.3 312 31.7
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 2.6e-30 137.9 324 29.9
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 3.4e-30 137.5 245 35.5
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.8e-30 136.7 311 30.5
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 5.8e-30 136.7 336 32.1
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 7.5e-30 136.3 335 31.3
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 7.5e-30 136.3 339 30.1
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 9.8e-30 136.0 323 29.4
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.3e-29 135.6 348 28.4
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.3e-29 135.6 310 31.3
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.3e-29 135.6 351 28.2
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 2.2e-29 134.8 326 30.1
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.2e-29 134.8 252 34.5
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 2.9e-29 134.4 399 28.3
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 2.9e-29 134.4 332 30.1
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 3.7e-29 134.0 329 28.0
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.7e-29 134.0 344 29.7
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 3.7e-29 134.0 338 30.2
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 6.4e-29 133.3 322 31.1
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.1e-28 132.5 332 30.4
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 1.4e-28 132.1 331 30.2
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.4e-28 132.1 350 29.1
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.4e-28 132.1 318 29.9
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.9e-28 131.7 329 29.8
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 3.2e-28 131.0 322 32.0
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 3.2e-28 131.0 322 32.0
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 3.2e-28 131.0 322 32.0
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 3.2e-28 131.0 275 33.5
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 4.1e-28 130.6 325 31.7
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 5.4e-28 130.2 485 27.2
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 9.2e-28 129.4 348 29.0
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 9.2e-28 129.4 311 31.2
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 9.2e-28 129.4 371 28.6
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.2e-27 129.0 248 33.1
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 1.2e-27 129.0 333 29.4
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.6e-27 127.1 325 31.4
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.6e-27 127.1 340 29.7
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 4.6e-27 127.1 325 28.6
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 4.6e-27 127.1 322 30.1
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 6.0e-27 126.7 338 30.5
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 7.8e-27 126.3 310 29.4
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 7.8e-27 126.3 333 29.7
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 1.0e-26 125.9 321 29.6
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 1.3e-26 125.6 345 28.7
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.3e-26 125.6 316 31.6
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.7e-26 125.2 370 26.5
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.7e-26 125.2 330 28.5
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 1.7e-26 125.2 324 29.6
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.7e-26 125.2 340 30.0
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.7e-26 125.2 340 30.0
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.3e-26 124.8 311 31.2
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 3.9e-26 124.0 310 30.0
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 5.0e-26 123.6 239 34.3
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 6.6e-26 123.2 347 27.7
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 6.6e-26 123.2 348 30.2
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 8.6e-26 122.9 338 30.2
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 8.6e-26 122.9 314 30.3
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 8.6e-26 122.9 485 26.2
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 1.1e-25 122.5 330 28.8
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.1e-25 122.5 340 28.8
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.1e-25 122.5 318 31.4
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.5e-25 122.1 270 31.9
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.5e-25 122.1 340 28.8
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.9e-25 121.7 355 27.9
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 2.5e-25 121.3 383 25.8
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 3.3e-25 120.9 323 31.3
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 4.3e-25 120.6 248 34.3
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 4.3e-25 120.6 248 34.3
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 4.3e-25 120.6 248 34.3
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 9.5e-25 119.4 343 29.4
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 9.5e-25 119.4 336 27.1
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 2.1e-24 118.2 314 29.9
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 2.8e-24 117.9 247 33.6
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 3.6e-24 117.5 310 29.0
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 4.7e-24 117.1 310 28.7
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 6.2e-24 116.7 351 29.1
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 2.3e-23 114.8 241 32.0
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 5.2e-23 113.6 313 30.0
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 6.8e-23 113.2 242 33.5
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 8.9e-23 112.8 327 27.5
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.2e-22 112.5 254 33.9
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.2e-22 112.5 311 28.0
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.5e-22 112.1 248 32.3
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 2.0e-22 111.7 247 32.8
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 2.0e-22 111.7 257 30.7
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 2.6e-22 111.3 255 31.4
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 3.4e-22 110.9 259 30.9
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 3.4e-22 110.9 248 31.9
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 3.4e-22 110.9 259 30.9
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 4.4e-22 110.5 315 27.9
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.8e-22 110.2 491 26.5
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 7.5e-22 109.8 327 26.6
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 7.5e-22 109.8 331 26.3
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 7.5e-22 109.8 257 30.7
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 9.9e-22 109.4 321 27.4
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 1.3e-21 109.0 360 26.9
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 1.7e-21 108.6 335 28.4
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 2.9e-21 107.8 309 28.8
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 2.9e-21 107.8 316 29.4
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.9e-21 107.1 290 28.6
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 6.4e-21 106.7 293 30.0
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.4e-20 105.5 282 27.7
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 1.4e-20 105.5 303 26.1
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.2e-20 104.4 244 27.0
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.1e-20 104.0 333 25.2
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.6e-19 102.1 486 25.1
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.6e-19 102.1 261 28.4
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.7e-19 101.3 294 29.3
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 6.0e-19 100.1 227 29.5
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 7.8e-19 99.8 244 27.0
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.3e-18 99.0 253 30.4
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.3e-18 99.0 252 26.6
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 2.3e-18 98.2 315 31.4
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.6e-18 96.7 206 35.9
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 1.9e-17 95.1 373 25.7
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.9e-17 95.1 233 26.6
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 3.3e-17 94.4 339 25.4
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 4.3e-17 94.0 255 27.8
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 2.1e-16 91.7 218 27.1
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 8.1e-16 89.7 262 24.4
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 7.1e-12 76.6 154 31.8
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 2.7e-11 74.7 149 28.2
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 3.5e-11 74.3 192 26.0
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 4.6e-11 73.9 109 37.6
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 3.9e-10 70.9 97 41.2
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 5.1e-10 70.5 124 32.3
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.3e-09 67.4 87 35.6
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 5.6e-09 67.0 132 33.3
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.8e-08 64.7 87 35.6
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.1e-07 61.2 71 40.8
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 1.5e-06 58.9 162 27.8


User provided reference genes

Program Settings