Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 1.2e-45 186.0 89 100.0
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 2.4e-33 145.2 74 87.8
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 5.5e-30 134.0 75 77.3
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 5.5e-30 134.0 75 77.3
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 1.2e-29 132.9 72 81.9
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 8.0e-29 130.2 73 76.7
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 8.0e-29 130.2 78 71.8
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.8e-28 129.0 74 74.3
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-28 129.0 74 74.3
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-28 129.0 74 74.3
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-28 129.0 74 74.3
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-28 129.0 74 74.3
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 1.8e-28 129.0 73 75.3
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.8e-28 129.0 78 70.5
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 1.8e-28 129.0 78 70.5
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.3e-28 128.6 73 76.7
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 3.0e-28 128.3 73 75.3
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 3.0e-28 128.3 72 77.8
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 4.0e-28 127.9 81 67.9
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 4.0e-28 127.9 72 77.8
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 5.2e-28 127.5 73 74.0
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 6.7e-28 127.1 73 74.0
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 6.7e-28 127.1 73 74.0
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 6.7e-28 127.1 73 74.0
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 8.8e-28 126.7 73 74.0
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 8.8e-28 126.7 73 72.6
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.2e-27 126.3 72 75.0
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.2e-27 126.3 72 75.0
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 1.5e-27 125.9 73 72.6
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 2.0e-27 125.6 73 71.2
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.0e-27 125.6 73 71.2
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 2.0e-27 125.6 73 72.6
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 2.6e-27 125.2 72 72.2
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 2.6e-27 125.2 72 73.6
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 3.3e-27 124.8 73 69.9
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 3.3e-27 124.8 70 75.7
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 5.7e-27 124.0 71 74.6
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 5.7e-27 124.0 72 70.8
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 5.7e-27 124.0 73 68.5
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 7.5e-27 123.6 72 73.6
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 9.7e-27 123.2 72 72.2
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 9.7e-27 123.2 73 69.9
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 9.7e-27 123.2 72 72.2
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 1.3e-26 122.9 81 63.0
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 1.7e-26 122.5 73 69.9
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 2.2e-26 122.1 72 70.8
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.8e-26 121.7 73 71.2
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 2.8e-26 121.7 73 71.2
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 2.8e-26 121.7 70 71.4
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 2.8e-26 121.7 73 69.9
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 2.8e-26 121.7 71 71.8
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 2.8e-26 121.7 73 69.9
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 3.7e-26 121.3 72 72.2
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 3.7e-26 121.3 73 69.9
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 4.8e-26 120.9 73 69.9
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 4.8e-26 120.9 73 69.9
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 4.8e-26 120.9 73 71.2
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 6.3e-26 120.6 70 70.0
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 6.3e-26 120.6 73 68.5
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 6.3e-26 120.6 73 67.1
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 6.3e-26 120.6 73 71.2
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 6.3e-26 120.6 67 79.1
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.1e-25 119.8 73 68.5
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 1.4e-25 119.4 78 64.1
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 2.4e-25 118.6 77 71.4
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 4.1e-25 117.9 70 70.0
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 7.0e-25 117.1 65 73.8
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 7.0e-25 117.1 78 65.4
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 7.0e-25 117.1 73 64.4
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 9.1e-25 116.7 71 70.4
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 1.2e-24 116.3 70 68.6
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.2e-24 116.3 70 68.6
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.6e-24 115.9 81 66.7
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.7e-24 115.2 77 63.6
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 2.7e-24 115.2 77 63.6
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 4.5e-24 114.4 82 61.0
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 4.5e-24 114.4 75 64.0
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 5.9e-24 114.0 70 67.1
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.0e-23 113.2 70 67.1
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.0e-23 113.2 70 67.1
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.0e-23 113.2 70 67.1
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.7e-23 112.5 74 63.5
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.7e-23 112.5 65 70.8
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 2.2e-23 112.1 60 80.0
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 2.2e-23 112.1 60 80.0
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 2.2e-23 112.1 82 62.2
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 2.9e-23 111.7 85 58.8
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 2.9e-23 111.7 74 66.2
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 2.9e-23 111.7 70 65.7
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.9e-23 111.7 83 62.7
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 3.8e-23 111.3 74 63.5
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 3.8e-23 111.3 59 79.7
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 3.8e-23 111.3 73 65.8
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 5.0e-23 110.9 65 67.7
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 5.0e-23 110.9 60 78.3
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 5.0e-23 110.9 77 62.3
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 5.0e-23 110.9 77 66.2
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.1e-22 109.8 73 64.4
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.5e-22 109.4 67 73.1
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.9e-22 109.0 72 62.5
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.9e-22 109.0 85 60.0
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 2.5e-22 108.6 73 64.4
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 2.5e-22 108.6 77 61.0
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 3.2e-22 108.2 64 73.4
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 3.2e-22 108.2 73 64.4
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 4.2e-22 107.8 73 63.0
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 4.2e-22 107.8 75 58.7
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 4.2e-22 107.8 60 73.3
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 5.5e-22 107.5 69 71.0
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 7.2e-22 107.1 73 61.6
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 7.2e-22 107.1 73 61.6
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 7.2e-22 107.1 73 61.6
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 7.2e-22 107.1 59 78.0
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.6e-21 105.9 73 61.6
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.6e-21 105.9 70 67.1
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 2.7e-21 105.1 102 49.0
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 3.6e-21 104.8 80 60.0
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 3.6e-21 104.8 73 61.6
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 6.1e-21 104.0 73 61.6
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 6.1e-21 104.0 72 62.5
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 8.0e-21 103.6 84 57.1
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.3e-20 102.1 58 74.1
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 3.0e-20 101.7 73 58.9
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 3.0e-20 101.7 60 73.3
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 5.2e-20 100.9 72 58.3
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 6.8e-20 100.5 72 56.9
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.2e-19 99.8 73 58.9
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 1.5e-19 99.4 70 61.4
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.5e-19 99.4 72 58.3
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 2.0e-19 99.0 70 60.0
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 2.0e-19 99.0 52 84.6
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 3.4e-19 98.2 56 75.0
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 9.8e-19 96.7 65 64.6
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 8.3e-18 93.6 81 53.1
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.1e-17 93.2 59 69.5
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.1e-17 93.2 63 63.5
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.4e-17 92.8 52 67.3
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.8e-17 92.4 70 62.9
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.4e-17 92.0 73 56.2
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 4.1e-17 91.3 70 52.9
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 5.4e-17 90.9 51 68.6
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 7.0e-17 90.5 50 70.0
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 1.2e-16 89.7 56 62.5
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 1.2e-16 89.7 75 56.0
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.6e-16 89.4 73 53.4
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 3.5e-16 88.2 72 56.9
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.7e-15 85.9 77 54.5
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 5.0e-15 84.3 90 47.8
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 1.9e-14 82.4 93 45.2
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.4e-12 76.3 60 58.3
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 2.3e-12 75.5 69 52.2
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 1.5e-11 72.8 57 56.1
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 5.7e-11 70.9 59 50.8
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 3.7e-10 68.2 37 70.3
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 8.3e-10 67.0 42 69.0
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 2.0e-08 62.4 52 57.7
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 4.5e-08 61.2 67 40.3
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 1.0e-07 60.1 36 69.4
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 7.3e-06 53.9 63 39.7


User provided reference genes

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