Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 0.0e+00 1426.0 738 100.0
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 7.2e-83 312.8 630 34.3
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 1.4e-73 282.0 580 31.0
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 4.8e-71 273.5 592 30.2
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 1.7e-68 265.0 586 29.9
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 1.7e-68 265.0 588 30.6
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 2.2e-68 264.6 584 30.5
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 3.8e-68 263.8 579 30.1
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 3.8e-68 263.8 592 29.2
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 3.8e-68 263.8 579 31.8
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 1.1e-67 262.3 591 30.3
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 1.1e-67 262.3 601 30.8
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 4.2e-67 260.4 598 30.3
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 4.2e-67 260.4 592 31.4
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 1.2e-66 258.8 594 29.5
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 1.2e-66 258.8 592 29.1
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 1.2e-66 258.8 593 29.2
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 1.6e-66 258.5 591 29.3
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 2.1e-66 258.1 594 29.5
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 2.7e-66 257.7 592 28.5
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 1.0e-65 255.8 604 29.8
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 1.4e-65 255.4 605 29.8
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 1.8e-65 255.0 589 29.4
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 6.8e-65 253.1 589 31.4
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 1.5e-64 251.9 621 28.0
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 2.0e-64 251.5 584 29.1
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 2.6e-64 251.1 591 28.8
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 3.4e-64 250.8 588 28.9
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 4.4e-64 250.4 589 28.5
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 7.5e-64 249.6 588 28.7
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 2.2e-63 248.1 575 29.6
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 2.2e-63 248.1 614 30.0
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 3.7e-63 247.3 593 30.5
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 6.3e-63 246.5 587 27.4
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 1.1e-62 245.7 590 29.2
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 1.4e-62 245.4 587 27.4
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 3.1e-62 244.2 591 28.3
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 4.1e-62 243.8 594 27.4
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 4.1e-62 243.8 590 30.3
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 7.0e-62 243.0 591 28.6
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 7.0e-62 243.0 589 28.7
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 9.1e-62 242.7 580 28.6
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 1.6e-61 241.9 579 30.4
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 2.0e-61 241.5 599 29.0
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 7.7e-61 239.6 589 28.0
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 1.0e-60 239.2 576 28.1
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 1.3e-60 238.8 600 28.5
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 5.0e-60 236.9 587 29.3
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 6.6e-60 236.5 586 27.3
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 1.5e-59 235.3 592 28.0
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 1.9e-59 235.0 592 28.9
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 2.5e-59 234.6 591 28.6
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 4.2e-59 233.8 657 25.7
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 1.6e-58 231.9 574 29.8
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 2.1e-58 231.5 589 28.0
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 2.8e-58 231.1 593 28.3
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 6.1e-58 229.9 597 29.0
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 1.0e-57 229.2 577 29.1
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 1.8e-57 228.4 595 28.1
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 2.3e-57 228.0 574 29.1
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 2.3e-57 228.0 592 27.2
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 3.0e-57 227.6 590 28.8
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 4.0e-57 227.3 591 28.1
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 8.9e-57 226.1 588 27.2
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 3.4e-56 224.2 577 26.3
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 8.3e-55 219.5 581 26.3
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 1.8e-54 218.4 575 28.3
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 3.1e-54 217.6 657 25.3
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 7.0e-54 216.5 618 26.4
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 9.2e-54 216.1 618 27.0
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 1.0e-52 212.6 582 26.3
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.9e-52 211.1 532 29.5
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 5.0e-52 210.3 597 26.6
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 5.0e-52 210.3 587 27.9
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 8.6e-52 209.5 590 26.9
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 3.3e-51 207.6 635 27.6
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 4.3e-51 207.2 579 28.0
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 2.0e-48 198.4 597 26.3
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 2.6e-48 198.0 491 29.3
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 5.8e-48 196.8 689 25.0
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 1.1e-46 192.6 604 26.7
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 1.9e-46 191.8 479 28.8
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 7.0e-46 189.9 493 28.0
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 3.5e-45 187.6 499 27.3
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 6.6e-44 183.3 374 31.8
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 8.6e-44 183.0 633 24.8
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 1.9e-43 181.8 452 28.1
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 3.3e-43 181.0 375 33.6
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 4.0e-41 174.1 436 26.8
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 4.0e-41 174.1 346 31.8
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 5.2e-41 173.7 344 30.8
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 4.4e-40 170.6 437 27.9
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 5.8e-40 170.2 600 25.8
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 9.8e-40 169.5 581 25.1
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 9.2e-38 162.9 468 28.6
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 9.2e-38 162.9 368 29.3
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 2.7e-37 161.4 350 30.6
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 1.7e-36 158.7 392 29.1
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 2.3e-36 158.3 365 29.6
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 3.0e-36 157.9 593 25.5
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 5.6e-35 153.7 316 28.5
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 1.6e-34 152.1 367 30.2
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 5.2e-33 147.1 360 27.8
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 4.1e-30 137.5 568 23.8
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.2e-21 109.4 465 23.4
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.8e-17 95.5 209 31.6
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 2.0e-16 92.0 147 33.3
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 1.7e-15 89.0 163 29.4
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 2.9e-15 88.2 165 31.5
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 3.0e-12 78.2 160 31.2
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 1.1e-09 69.7 275 21.5
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 3.1e-09 68.2 156 25.0
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 2.4e-06 58.5 80 36.2


User provided reference genes

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