Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 5.5e-29 130.2 61 100.0
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 6.5e-14 80.1 59 64.4
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.4e-13 79.0 57 61.4
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 1.2e-12 75.9 58 62.1
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 3.0e-11 71.2 54 59.3
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 2.6e-10 68.2 54 57.4
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 4.4e-10 67.4 54 55.6
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 5.7e-10 67.0 54 53.7
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 7.4e-10 66.6 54 55.6
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 9.7e-10 66.2 52 53.8
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 2.2e-09 65.1 52 53.8
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 2.2e-09 65.1 39 71.8
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 2.8e-09 64.7 54 53.7
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 3.7e-09 64.3 52 55.8
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 3.7e-09 64.3 52 53.8
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 3.7e-09 64.3 52 51.9
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 4.8e-09 63.9 52 51.9
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 4.8e-09 63.9 56 51.8
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 4.8e-09 63.9 55 52.7
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 6.3e-09 63.5 57 50.9
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 6.3e-09 63.5 53 52.8
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 8.2e-09 63.2 48 58.3
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 8.2e-09 63.2 52 51.9
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 8.2e-09 63.2 39 69.2
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 8.2e-09 63.2 39 69.2
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 8.2e-09 63.2 39 69.2
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 8.2e-09 63.2 39 71.8
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 8.2e-09 63.2 39 69.2
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 8.2e-09 63.2 39 69.2
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 8.2e-09 63.2 39 69.2
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 8.2e-09 63.2 57 50.9
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 1.1e-08 62.8 48 58.3
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 1.1e-08 62.8 48 58.3
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.1e-08 62.8 39 69.2
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.1e-08 62.8 39 69.2
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.1e-08 62.8 39 69.2
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 1.1e-08 62.8 39 69.2
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 1.1e-08 62.8 39 69.2
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.4e-08 62.4 39 69.2
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 1.4e-08 62.4 39 66.7
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 1.4e-08 62.4 39 66.7
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 1.4e-08 62.4 39 69.2
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 1.4e-08 62.4 39 69.2
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.8e-08 62.0 58 50.0
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 1.8e-08 62.0 39 66.7
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 1.8e-08 62.0 39 69.2
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 1.8e-08 62.0 52 51.9
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.4e-08 61.6 39 69.2
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 2.4e-08 61.6 54 48.1
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 2.4e-08 61.6 48 60.4
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 3.1e-08 61.2 39 66.7
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 3.1e-08 61.2 39 66.7
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 4.1e-08 60.8 39 66.7
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 4.1e-08 60.8 39 66.7
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 4.1e-08 60.8 39 64.1
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 4.1e-08 60.8 39 66.7
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 5.3e-08 60.5 39 66.7
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 5.3e-08 60.5 39 66.7
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 6.9e-08 60.1 39 66.7
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 6.9e-08 60.1 39 66.7
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 6.9e-08 60.1 54 46.3
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 6.9e-08 60.1 39 66.7
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 9.1e-08 59.7 48 54.2
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.5e-07 58.9 56 46.4
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 1.5e-07 58.9 52 51.9
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 2.0e-07 58.5 38 68.4
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 2.0e-07 58.5 57 47.4
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 2.0e-07 58.5 57 47.4
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 2.0e-07 58.5 57 47.4
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 2.0e-07 58.5 57 47.4
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 2.0e-07 58.5 57 47.4
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 2.0e-07 58.5 57 47.4
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 2.6e-07 58.2 39 64.1
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 2.6e-07 58.2 56 46.4
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.6e-07 58.2 53 47.2
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.6e-07 58.2 36 69.4
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 2.6e-07 58.2 48 52.1
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 2.6e-07 58.2 53 47.2
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 3.4e-07 57.8 53 47.2
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 3.4e-07 57.8 57 47.4
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 3.4e-07 57.8 57 47.4
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 3.4e-07 57.8 57 47.4
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 3.4e-07 57.8 57 47.4
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 3.4e-07 57.8 57 47.4
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 3.4e-07 57.8 56 46.4
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 3.4e-07 57.8 48 52.1
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.4e-07 57.8 52 50.0
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 3.4e-07 57.8 49 49.0
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 4.5e-07 57.4 57 47.4
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 4.5e-07 57.4 57 47.4
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 4.5e-07 57.4 57 47.4
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 4.5e-07 57.4 39 61.5
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 4.5e-07 57.4 52 50.0
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 4.5e-07 57.4 52 50.0
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 4.5e-07 57.4 52 50.0
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 5.9e-07 57.0 57 43.9
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 5.9e-07 57.0 57 45.6
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 5.9e-07 57.0 57 45.6
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 5.9e-07 57.0 52 50.0
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 5.9e-07 57.0 52 50.0
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 7.7e-07 56.6 54 42.6
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 7.7e-07 56.6 52 48.1
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 1.0e-06 56.2 39 59.0
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.3e-06 55.8 52 46.2
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 1.7e-06 55.5 39 61.5
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 2.2e-06 55.1 38 60.5
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.9e-06 54.7 38 60.5
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 2.9e-06 54.7 52 46.2
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 3.8e-06 54.3 49 44.9
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 5.0e-06 53.9 41 56.1
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 6.5e-06 53.5 57 45.6


User provided reference genes

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