Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 5.3e-226 787.3 393 100.0
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 9.0e-133 477.6 377 65.3
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 3.8e-131 472.2 370 62.4
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.5e-127 460.3 363 61.7
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 4.2e-122 442.2 391 56.8
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 7.1e-122 441.4 342 61.7
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 1.2e-121 440.7 364 58.8
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 2.1e-121 439.9 358 60.6
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 6.0e-121 438.3 380 57.1
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 7.9e-121 438.0 368 58.4
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.0e-120 437.6 360 60.0
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 1.3e-120 437.2 392 56.6
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.3e-120 437.2 392 56.6
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.3e-120 437.2 393 56.0
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.3e-120 436.4 387 56.8
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.9e-120 435.6 396 55.6
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 5.1e-120 435.3 392 56.4
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 5.1e-120 435.3 378 57.9
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 6.7e-120 434.9 387 56.1
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 8.7e-120 434.5 387 56.3
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 1.1e-119 434.1 394 56.3
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 1.1e-119 434.1 392 56.1
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 1.1e-119 434.1 356 59.6
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.1e-119 434.1 360 59.2
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.5e-119 433.7 392 56.1
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 1.9e-119 433.3 393 56.0
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 1.9e-119 433.3 380 57.1
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 2.5e-119 433.0 393 56.2
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 2.5e-119 433.0 382 56.3
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 3.3e-119 432.6 354 60.2
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 3.3e-119 432.6 354 60.2
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 3.3e-119 432.6 380 58.7
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 3.3e-119 432.6 385 55.6
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 4.3e-119 432.2 392 56.1
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 4.3e-119 432.2 378 55.3
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 5.7e-119 431.8 394 56.1
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 7.4e-119 431.4 354 60.2
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 7.4e-119 431.4 354 60.2
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 7.4e-119 431.4 356 59.3
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 7.4e-119 431.4 389 55.5
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 9.6e-119 431.0 392 56.1
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 9.6e-119 431.0 392 56.1
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 1.6e-118 430.3 354 59.9
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 1.6e-118 430.3 354 59.9
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 1.6e-118 430.3 387 55.6
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 1.6e-118 430.3 360 60.3
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 2.8e-118 429.5 389 55.3
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 3.7e-118 429.1 354 59.9
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 3.7e-118 429.1 377 57.3
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 3.7e-118 429.1 392 55.6
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 4.8e-118 428.7 387 56.6
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 4.8e-118 428.7 405 55.1
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 4.8e-118 428.7 399 55.1
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 6.3e-118 428.3 392 55.9
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 6.3e-118 428.3 360 57.8
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 6.3e-118 428.3 376 56.6
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 1.1e-117 427.6 391 54.7
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 1.4e-117 427.2 354 59.6
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 1.8e-117 426.8 342 60.2
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 1.8e-117 426.8 347 59.1
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 1.8e-117 426.8 342 59.6
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 2.4e-117 426.4 342 59.1
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 3.1e-117 426.0 392 55.4
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 3.1e-117 426.0 384 55.7
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 4.1e-117 425.6 391 54.2
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 4.1e-117 425.6 392 53.3
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 5.3e-117 425.2 384 54.9
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 5.3e-117 425.2 357 58.3
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 9.0e-117 424.5 390 54.1
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 9.0e-117 424.5 342 60.2
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 1.2e-116 424.1 360 57.2
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 1.2e-116 424.1 356 57.9
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 1.5e-116 423.7 384 56.0
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 2.6e-116 422.9 342 60.2
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 2.6e-116 422.9 384 54.2
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 3.4e-116 422.5 360 57.2
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 3.4e-116 422.5 386 54.9
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 3.4e-116 422.5 384 54.7
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 4.5e-116 422.2 340 58.8
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 1.0e-115 421.0 391 55.0
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 1.0e-115 421.0 386 55.4
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 1.3e-115 420.6 364 56.9
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 1.3e-115 420.6 386 55.2
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 1.7e-115 420.2 356 57.0
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 2.2e-115 419.9 342 59.1
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 2.9e-115 419.5 392 54.3
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 2.9e-115 419.5 392 54.3
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 2.9e-115 419.5 352 57.4
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 2.9e-115 419.5 342 58.2
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 6.5e-115 418.3 393 53.7
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 6.5e-115 418.3 394 53.6
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 6.5e-115 418.3 358 58.1
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.4e-114 417.2 356 57.9
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 7.2e-114 414.8 389 54.0
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 9.3e-114 414.5 391 54.2
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 9.3e-114 414.5 376 54.3
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.2e-113 414.1 342 57.6
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 1.2e-113 414.1 354 57.6
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.2e-113 414.1 354 56.5
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 1.6e-113 413.7 361 56.0
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 3.6e-113 412.5 393 54.2
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.8e-112 410.2 342 57.3
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 3.0e-112 409.5 356 57.3
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 1.5e-111 407.1 354 57.1
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 1.9e-111 406.8 373 52.8
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 2.5e-111 406.4 386 54.1
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 2.8e-110 402.9 384 53.6
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 3.1e-109 399.4 393 54.7
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 5.3e-109 398.7 341 56.6
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 9.4e-106 387.9 389 50.1
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 9.4e-106 387.9 479 45.1
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.6e-105 387.1 390 49.7
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 6.3e-102 375.2 438 47.3
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 2.6e-100 369.8 359 52.4
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.7e-99 367.1 302 59.9
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.8e-99 365.9 313 56.5
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.1e-98 364.4 350 50.3
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 3.6e-97 359.4 307 55.4
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 3.3e-95 352.8 501 39.5
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 5.7e-95 352.1 313 55.0
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.3e-94 350.9 261 62.5
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 4.5e-92 342.4 286 57.7
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 1.7e-91 340.5 241 65.1
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 6.5e-91 338.6 289 55.7
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 5.7e-79 298.9 338 44.1
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.3e-78 297.7 309 49.5
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 8.3e-70 268.5 347 40.3
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 3.8e-67 259.6 348 42.5
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 8.6e-59 231.9 197 57.4
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 3.6e-49 199.9 219 46.6
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 3.0e-43 180.3 138 66.7
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 3.1e-40 170.2 201 48.3
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 8.4e-38 162.2 248 44.0
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 2.4e-37 160.6 228 42.1
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 7.3e-34 149.1 98 72.4
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.7e-22 111.3 78 66.7
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.9e-22 110.5 80 66.2
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.9e-18 97.8 127 40.9
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.1e-13 82.0 79 53.2
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 1.1e-10 72.0 62 45.2
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 1.3e-09 68.6 70 55.7
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 3.1e-08 63.9 52 59.6


User provided reference genes

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