Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 0.0e+00 1274.6 621 100.0
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 2.6e-166 589.7 642 48.1
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 7.5e-158 561.6 606 49.8
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 3.3e-137 493.0 625 43.4
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.3e-137 493.0 619 43.3
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 1.2e-136 491.1 637 42.7
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 2.8e-136 490.0 633 43.8
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 3.1e-135 486.5 551 46.1
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 2.6e-134 483.4 648 41.8
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 3.4e-134 483.0 621 42.5
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 4.4e-134 482.6 514 48.2
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 7.5e-134 481.9 627 41.6
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 9.8e-134 481.5 567 45.5
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 9.8e-134 481.5 537 46.0
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 6.4e-133 478.8 622 43.1
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 8.3e-133 478.4 598 44.6
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 1.1e-132 478.0 637 42.2
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 3.2e-132 476.5 640 41.7
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 4.1e-132 476.1 625 44.0
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 5.4e-132 475.7 632 44.0
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 9.2e-132 474.9 634 41.6
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 1.6e-131 474.2 630 42.7
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 1.6e-131 474.2 638 42.8
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 2.7e-131 473.4 520 47.3
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.7e-131 473.4 612 43.3
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 3.5e-131 473.0 602 43.5
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 3.5e-131 473.0 540 46.1
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 3.5e-131 473.0 629 43.2
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 6.0e-131 472.2 518 47.1
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 1.3e-130 471.1 650 41.8
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 1.3e-130 471.1 556 44.4
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 2.3e-130 470.3 619 43.5
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 8.6e-130 468.4 524 46.4
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 1.1e-129 468.0 623 42.2
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 1.5e-129 467.6 627 42.7
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 2.5e-129 466.8 544 46.0
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 4.3e-129 466.1 634 42.6
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 4.3e-129 466.1 627 41.8
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 1.2e-128 464.5 640 40.9
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 2.1e-128 463.8 493 46.7
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 2.8e-128 463.4 500 47.6
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 3.6e-128 463.0 640 42.8
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 3.6e-128 463.0 591 42.5
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 4.7e-128 462.6 584 44.3
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 6.2e-128 462.2 634 42.6
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 8.1e-128 461.8 604 42.4
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 1.1e-127 461.5 619 41.4
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 2.3e-127 460.3 634 41.8
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 2.3e-127 460.3 634 41.6
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 2.3e-127 460.3 627 42.3
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 3.1e-127 459.9 633 41.7
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 3.1e-127 459.9 650 40.9
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 5.2e-127 459.1 623 41.4
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 8.9e-127 458.4 625 42.4
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 8.9e-127 458.4 629 42.0
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 8.9e-127 458.4 512 47.1
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 1.2e-126 458.0 547 44.1
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 2.6e-126 456.8 601 42.3
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 3.4e-126 456.4 587 44.0
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 4.4e-126 456.1 617 42.1
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.3e-125 454.5 595 43.7
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 2.2e-125 453.8 619 42.2
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 3.7e-125 453.0 642 43.0
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 8.3e-125 451.8 547 44.8
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 1.1e-124 451.4 628 40.6
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 1.1e-124 451.4 630 41.6
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 1.9e-124 450.7 624 42.3
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 2.4e-124 450.3 587 44.3
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-123 448.0 587 42.6
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 1.6e-123 447.6 515 47.4
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.6e-123 447.6 584 43.7
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-123 447.2 587 42.4
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 7.8e-123 445.3 603 41.5
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 1.9e-121 440.7 614 41.5
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 1.9e-121 440.7 670 38.1
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.3e-121 439.9 583 43.1
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 4.3e-121 439.5 438 52.3
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.3e-121 439.5 562 43.1
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.6e-121 439.1 501 46.7
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 1.2e-120 438.0 613 41.1
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 6.2e-120 435.6 611 40.9
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 1.1e-119 434.9 626 40.6
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 1.4e-119 434.5 487 45.8
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 1.8e-119 434.1 589 41.6
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 8.9e-119 431.8 500 44.4
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 1.3e-117 427.9 493 45.2
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 1.1e-116 424.9 595 40.7
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.4e-116 424.5 483 44.5
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 2.8e-112 410.2 498 45.0
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 3.1e-111 406.8 626 37.5
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 5.8e-110 402.5 487 45.4
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 2.2e-109 400.6 435 48.7
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 2.9e-109 400.2 415 48.9
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 1.2e-107 394.8 569 39.7
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 6.0e-107 392.5 531 42.4
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 1.9e-105 387.5 459 46.4
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 2.8e-104 383.6 512 41.8
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 2.4e-100 370.5 633 37.4
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.3e-98 364.8 401 47.1
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-98 362.8 556 40.3
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 7.4e-89 332.4 378 45.5
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 6.3e-80 302.8 373 44.2
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 8.5e-77 292.4 272 51.5
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 1.6e-75 288.1 291 48.5
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 2.7e-75 287.3 365 44.7
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 6.9e-71 272.7 506 34.6
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 2.5e-68 264.2 214 59.3
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 1.1e-63 248.8 376 38.6
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 5.9e-62 243.0 328 40.9
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 1.2e-54 218.8 314 42.4
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 2.2e-48 198.0 189 51.3
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 4.8e-48 196.8 188 51.6
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 1.0e-45 189.1 153 56.2
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 4.2e-44 183.7 230 42.6
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 1.5e-41 175.3 178 46.1
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 2.2e-40 171.4 436 29.1
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-38 164.1 167 49.7
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-38 164.1 167 49.7
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-38 164.1 167 49.7
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-38 164.1 167 49.7
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 4.5e-38 163.7 134 60.4
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.0e-34 152.5 88 72.7
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 1.8e-34 151.8 362 30.9
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 2.3e-34 151.4 145 46.2
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 9.2e-31 139.4 231 35.1
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.9e-28 131.7 118 50.8
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 2.2e-24 118.2 174 37.9
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 2.2e-24 118.2 123 48.0
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.4e-18 99.0 58 70.7
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 9.8e-17 92.8 233 28.8
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-16 92.4 141 37.6
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 3.7e-16 90.9 143 37.1
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 8.3e-16 89.7 94 44.7
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 1.1e-15 89.4 94 51.1
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-15 86.7 167 34.1
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.1e-11 75.1 45 66.7
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 2.2e-08 65.1 32 75.0
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 1.4e-07 62.4 53 56.6
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 5.4e-07 60.5 47 46.8


User provided reference genes

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