Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.3e-288 995.7 510 100.0
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 8.4e-131 471.5 382 64.4
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.0e-125 452.6 416 57.9
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.6e-116 423.3 384 59.6
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 4.2e-106 389.4 335 58.8
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 4.8e-102 375.9 319 58.0
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.5e-100 370.9 318 56.6
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 3.8e-99 366.3 315 56.5
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 9.3e-98 361.7 308 56.2
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 9.3e-98 361.7 325 54.5
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 9.3e-98 361.7 329 52.9
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.2e-97 361.3 337 52.2
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.2e-97 361.3 337 52.2
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 1.6e-97 360.9 316 56.0
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.7e-97 360.1 328 52.7
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 7.9e-97 358.6 320 54.1
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.0e-96 358.2 329 52.6
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.0e-96 358.2 324 53.1
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.3e-96 357.8 329 52.3
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.3e-96 357.8 329 52.3
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 2.3e-96 357.1 315 53.3
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.3e-96 357.1 319 54.2
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 3.9e-96 356.3 319 54.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 5.1e-96 355.9 319 54.5
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 8.7e-96 355.1 320 52.8
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.1e-95 354.8 316 54.1
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 3.3e-95 353.2 320 53.1
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 4.3e-95 352.8 321 53.9
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 7.4e-95 352.1 320 53.1
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 9.7e-95 351.7 316 54.1
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.6e-94 350.9 321 52.3
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.6e-94 350.9 323 53.6
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 2.2e-94 350.5 318 51.9
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 2.8e-94 350.1 317 52.7
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.8e-94 350.1 319 53.6
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.7e-94 349.7 318 52.2
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 4.8e-94 349.4 315 54.9
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.2e-94 348.6 318 52.2
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.4e-93 347.8 320 51.6
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.4e-93 347.8 318 52.8
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.4e-93 347.8 326 51.5
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 1.8e-93 347.4 320 52.2
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.8e-93 347.4 320 52.2
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.8e-93 347.4 319 53.0
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 3.1e-93 346.7 320 51.9
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.1e-93 346.7 316 53.5
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 4.1e-93 346.3 278 61.9
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 5.3e-93 345.9 320 54.1
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 9.0e-93 345.1 320 52.5
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 9.0e-93 345.1 319 53.6
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 9.0e-93 345.1 323 51.1
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.2e-92 344.7 320 50.9
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 1.2e-92 344.7 316 53.2
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 1.2e-92 344.7 316 53.2
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.5e-92 344.4 323 52.0
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 4.5e-92 342.8 316 52.8
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 4.5e-92 342.8 320 51.9
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 4.5e-92 342.8 320 51.9
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 5.9e-92 342.4 320 52.2
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 7.7e-92 342.0 338 52.4
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 7.7e-92 342.0 317 53.3
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.7e-91 340.9 316 53.2
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.7e-91 340.9 320 52.5
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.7e-91 340.9 317 53.3
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.2e-91 340.5 327 52.0
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 2.9e-91 340.1 316 52.5
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 3.8e-91 339.7 320 53.1
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 3.8e-91 339.7 316 53.2
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 3.8e-91 339.7 316 52.5
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 3.8e-91 339.7 325 52.3
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 5.0e-91 339.3 320 51.2
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 5.0e-91 339.3 331 51.4
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 6.5e-91 339.0 315 52.4
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 6.5e-91 339.0 314 52.9
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 6.5e-91 339.0 325 50.8
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 8.5e-91 338.6 317 53.0
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.4e-90 337.8 329 52.6
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.4e-90 337.8 320 51.6
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.9e-90 337.4 316 53.8
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 1.9e-90 337.4 314 52.5
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.9e-90 337.4 314 52.5
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 5.5e-90 335.9 316 51.9
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 5.5e-90 335.9 320 51.2
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 7.2e-90 335.5 317 52.4
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 7.2e-90 335.5 317 52.4
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 7.2e-90 335.5 318 51.6
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 7.2e-90 335.5 318 51.9
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.2e-89 334.7 316 51.6
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.6e-89 334.3 316 51.9
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.6e-89 334.3 320 51.9
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 2.7e-89 333.6 342 48.5
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 3.6e-89 333.2 336 47.9
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 6.1e-89 332.4 304 53.0
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.4e-88 331.3 319 50.5
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 3.0e-88 330.1 275 56.7
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 1.5e-87 327.8 314 51.6
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 3.3e-87 326.6 303 52.1
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 5.7e-87 325.9 316 51.6
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 3.7e-86 323.2 287 54.4
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 3.7e-86 323.2 338 49.1
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 9.1e-85 318.5 286 54.9
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 3.4e-84 316.6 292 53.8
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.2e-81 308.1 341 47.2
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 3.6e-81 306.6 264 55.7
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 1.3e-78 298.1 317 47.3
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 2.4e-77 293.9 395 42.8
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.2e-76 291.6 262 56.5
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.0e-76 290.8 353 46.7
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 3.4e-76 290.0 252 55.2
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.9e-76 289.3 247 60.7
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 3.8e-75 286.6 326 44.5
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 8.5e-75 285.4 269 50.6
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 8.5e-75 285.4 320 44.4
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.2e-73 281.6 269 51.7
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.8e-72 277.7 251 52.6
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 7.4e-71 272.3 261 52.5
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 2.2e-70 270.8 299 46.5
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 1.4e-69 268.1 274 49.6
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 5.2e-64 249.6 346 41.0
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 5.3e-61 239.6 207 56.5
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 9.1e-61 238.8 219 51.6
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 1.2e-55 221.9 210 50.5
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 3.7e-54 216.9 216 50.5
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 2.5e-50 204.1 184 57.1
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.1e-49 201.1 203 52.7
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 2.8e-49 200.7 189 53.4
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.4e-48 198.4 323 37.5
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 4.0e-48 196.8 178 55.6
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-45 188.7 159 57.2
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 4.1e-45 186.8 172 50.6
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 3.3e-34 150.6 189 42.9
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 1.1e-32 145.6 324 32.4
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 4.4e-31 140.2 287 32.8
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 7.5e-31 139.4 146 56.2
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 2.1e-28 131.3 117 49.6
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 5.2e-24 116.7 105 49.5
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 8.9e-24 115.9 184 39.1
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.1e-20 104.8 129 41.1
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 3.5e-20 104.0 93 49.5
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 1.7e-14 85.1 86 51.2
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.0e-11 75.9 78 56.4
AagrBONN_evm.TU.Sc2ySwM_344.171 Anthoceros agrestis HOM05D005356 ORTHO05D074930 3.6e-09 67.4 109 39.4
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.5e-07 62.0 55 56.4


User provided reference genes

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