Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 2.2e-124 449.5 335 100.0
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-60 237.7 317 59.6
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 3.9e-60 236.1 319 60.2
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 6.6e-60 235.3 317 59.3
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 1.9e-59 233.8 331 57.1
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 2.5e-59 233.4 317 59.3
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 5.6e-59 232.3 317 59.3
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 9.6e-59 231.5 317 58.7
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 4.0e-57 226.1 317 58.4
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 4.0e-57 226.1 317 58.4
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 6.9e-57 225.3 317 58.7
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 9.0e-57 224.9 317 59.0
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 1.2e-56 224.6 317 59.6
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 1.2e-56 224.6 319 61.1
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 1.5e-56 224.2 319 56.1
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 2.0e-56 223.8 321 59.2
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 4.4e-56 222.6 317 58.4
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 7.6e-56 221.9 317 57.4
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 9.9e-56 221.5 321 50.8
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 1.7e-55 220.7 319 51.7
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.1e-54 218.0 317 57.4
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 9.3e-54 214.9 316 65.2
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 6.0e-53 212.2 319 60.5
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 1.0e-52 211.5 320 59.4
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 1.3e-52 211.1 315 60.0
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 2.3e-52 210.3 320 59.1
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 3.0e-52 209.9 312 54.5
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 3.9e-52 209.5 317 58.7
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 3.9e-52 209.5 317 58.7
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 8.7e-52 208.4 334 58.7
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 2.5e-51 206.8 292 58.9
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 4.3e-51 206.1 307 57.0
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 4.3e-51 206.1 317 57.7
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 7.3e-51 205.3 302 58.3
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.3e-50 204.5 319 55.2
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 1.3e-50 204.5 313 58.5
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 2.8e-50 203.4 319 49.2
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 3.6e-50 203.0 306 61.8
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 4.8e-50 202.6 333 52.9
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.1e-49 201.4 319 53.0
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 1.1e-49 201.4 331 48.6
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.1e-49 201.4 317 56.8
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.1e-49 201.4 318 51.6
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 1.4e-49 201.1 317 57.7
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-49 201.1 236 55.9
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.4e-49 200.3 317 63.4
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 5.3e-49 199.1 310 58.7
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 1.5e-48 197.6 308 59.7
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.0e-48 197.2 312 55.4
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 2.6e-48 196.8 320 57.2
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 2.6e-48 196.8 307 63.8
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 2.6e-48 196.8 329 50.8
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 4.5e-48 196.1 317 50.5
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 5.8e-48 195.7 320 58.1
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.8e-48 195.7 320 56.6
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 7.6e-48 195.3 329 50.5
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 9.9e-48 194.9 293 59.4
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 9.9e-48 194.9 317 53.3
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 3.8e-47 193.0 309 58.9
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 4.9e-47 192.6 322 53.1
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 4.9e-47 192.6 328 57.6
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 4.9e-47 192.6 317 58.0
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 4.9e-47 192.6 312 62.5
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 8.4e-47 191.8 324 56.8
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 8.4e-47 191.8 312 56.7
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-46 191.4 310 56.5
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-46 191.4 310 56.5
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 1.4e-46 191.0 324 56.2
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-46 191.0 320 55.0
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.9e-46 190.7 306 59.2
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 2.4e-46 190.3 310 58.1
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 3.2e-46 189.9 317 58.0
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.2e-46 189.9 320 55.0
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 3.2e-46 189.9 310 52.9
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 5.4e-46 189.1 334 56.0
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 7.1e-46 188.7 310 50.0
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 9.3e-46 188.3 358 41.1
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 9.3e-46 188.3 325 49.8
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.2e-45 188.0 309 56.3
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 2.7e-45 186.8 335 51.0
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.7e-45 186.8 309 54.7
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 2.7e-45 186.8 321 51.7
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 3.5e-45 186.4 310 48.7
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.5e-45 186.4 310 53.2
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 4.6e-45 186.0 319 57.1
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 6.0e-45 185.7 335 49.9
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 7.9e-45 185.3 306 58.2
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 7.9e-45 185.3 327 53.5
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 1.0e-44 184.9 310 50.6
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.0e-44 184.9 317 56.5
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.3e-44 184.5 329 49.2
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 1.8e-44 184.1 310 57.4
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.3e-44 183.7 309 56.3
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 3.9e-44 183.0 320 56.6
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 1.5e-43 181.0 319 48.9
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 1.9e-43 180.6 316 56.3
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 2.5e-43 180.3 329 55.6
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 7.4e-43 178.7 319 49.5
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 1.3e-42 177.9 218 48.6
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.3e-42 177.9 283 58.7
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 2.1e-42 177.2 306 47.4
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 3.7e-42 176.4 311 56.9
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 3.7e-42 176.4 319 46.4
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 4.8e-42 176.0 322 49.1
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 4.8e-42 176.0 322 49.1
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.4e-41 173.7 323 45.8
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.4e-41 173.7 323 45.8
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-40 171.4 175 49.1
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.2e-40 171.4 293 58.4
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.5e-40 169.5 310 50.3
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 5.8e-40 169.1 175 48.6
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 9.9e-40 168.3 317 46.7
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.1e-38 164.9 316 52.2
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.4e-38 164.5 306 56.5
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.9e-38 164.1 283 57.6
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.6e-37 161.0 330 50.6
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 2.1e-37 160.6 305 56.4
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 7.9e-37 158.7 294 57.8
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 7.9e-37 158.7 296 55.7
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.0e-36 158.3 228 46.5
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 1.3e-36 157.9 312 52.9
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 2.3e-36 157.1 291 60.1
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 3.0e-36 156.8 355 40.3
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 6.7e-36 155.6 219 55.7
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 8.7e-36 155.2 330 47.0
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 4.3e-35 152.9 217 43.3
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 4.3e-35 152.9 317 48.9
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 7.4e-35 152.1 129 59.7
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-33 147.5 176 47.2
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 6.9e-33 145.6 177 45.2
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.5e-32 144.4 140 53.6
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 2.2e-31 140.6 114 59.6
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 1.1e-30 138.3 154 48.1
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 4.2e-30 136.3 175 42.9
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 6.0e-29 132.5 124 56.5
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 7.9e-29 132.1 151 46.4
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.8e-28 131.0 120 58.3
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 8.7e-28 128.6 186 51.6
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-25 121.7 186 43.5
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 2.9e-23 113.6 187 50.3
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 8.5e-23 112.1 232 37.5
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 9.7e-19 98.6 152 42.8
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.2e-18 97.4 79 62.0
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.2e-18 95.5 79 60.8
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.2e-18 95.5 79 60.8
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 5.9e-16 89.4 212 61.3
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.0e-15 86.3 72 59.7
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 9.4e-14 82.0 137 41.6
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.2e-13 81.6 126 38.9
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 1.2e-13 81.6 139 38.8
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 4.7e-13 79.7 137 39.4
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.1e-13 79.3 72 54.2
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 7.9e-13 79.0 157 29.9
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 4.4e-11 73.2 67 56.7
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 4.8e-10 69.7 67 55.2
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.2e-08 65.1 207 50.7
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 4.5e-08 63.2 61 54.1
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 1.0e-07 62.0 97 39.2
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-07 61.6 158 28.5
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.5e-07 59.3 62 51.6
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 8.5e-07 58.9 47 59.6
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-06 58.5 103 37.9
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 1.1e-06 58.5 152 34.2


User provided reference genes

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