Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 6.0e-273 943.7 534 100.0
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 8.8e-115 418.3 526 46.6
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 3.1e-104 383.3 553 41.2
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 9.1e-104 381.7 526 43.3
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 2.5e-101 373.6 521 41.8
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 3.2e-101 373.2 527 42.1
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 5.5e-101 372.5 523 44.2
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 7.2e-101 372.1 523 42.8
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 7.2e-101 372.1 525 42.9
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 1.6e-100 370.9 525 42.5
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 4.7e-100 369.4 521 43.6
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 6.1e-100 369.0 525 42.7
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 1.0e-99 368.2 522 41.6
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 1.0e-99 368.2 523 43.8
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 1.8e-99 367.5 553 40.5
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 3.0e-99 366.7 524 42.6
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 4.0e-99 366.3 523 42.1
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 5.2e-99 365.9 524 42.4
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 6.8e-99 365.5 521 43.0
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 8.8e-99 365.2 523 41.1
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.2e-98 364.8 521 41.8
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 2.0e-98 364.0 528 42.4
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 2.0e-98 364.0 521 41.7
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 2.0e-98 364.0 522 42.3
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 3.4e-98 363.2 521 42.0
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 3.4e-98 363.2 523 43.0
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 4.4e-98 362.8 521 43.2
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 4.4e-98 362.8 521 41.7
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 5.7e-98 362.5 521 42.8
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 5.7e-98 362.5 521 43.0
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 9.8e-98 361.7 521 41.7
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.7e-97 360.9 521 41.8
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 2.2e-97 360.5 517 42.7
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 2.2e-97 360.5 521 42.6
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 2.2e-97 360.5 521 43.2
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 2.2e-97 360.5 522 42.7
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 4.8e-97 359.4 521 42.8
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 8.3e-97 358.6 521 41.1
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 1.1e-96 358.2 525 41.5
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 1.1e-96 358.2 530 42.6
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 1.4e-96 357.8 520 43.5
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 1.4e-96 357.8 524 41.4
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 3.1e-96 356.7 523 40.9
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 4.1e-96 356.3 540 40.2
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 5.4e-96 355.9 522 41.0
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 7.0e-96 355.5 521 42.4
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 9.1e-96 355.1 523 41.1
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 9.1e-96 355.1 540 40.7
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.2e-95 354.8 526 40.9
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 1.2e-95 354.8 526 42.2
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 4.5e-95 352.8 523 42.3
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 5.9e-95 352.4 529 40.5
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 7.7e-95 352.1 522 41.6
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.3e-94 351.3 521 42.2
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 1.7e-94 350.9 531 41.1
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 2.3e-94 350.5 521 40.7
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 2.9e-94 350.1 523 46.5
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 6.6e-94 349.0 537 41.9
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 8.6e-94 348.6 521 48.4
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.5e-93 347.8 521 41.1
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 1.5e-93 347.8 521 40.7
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.9e-93 347.4 523 41.1
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 1.9e-93 347.4 522 40.8
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 2.5e-93 347.1 521 41.1
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 2.5e-93 347.1 522 40.0
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 4.2e-93 346.3 523 41.7
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 5.5e-93 345.9 545 40.9
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 7.2e-93 345.5 522 39.8
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 9.5e-93 345.1 525 39.4
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.2e-92 344.7 524 40.1
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 1.2e-92 344.7 524 40.6
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 1.2e-92 344.7 524 40.6
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 1.6e-92 344.4 525 39.6
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 2.8e-92 343.6 524 40.6
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 3.6e-92 343.2 525 39.0
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 3.6e-92 343.2 523 40.3
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 6.1e-92 342.4 522 39.5
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 6.1e-92 342.4 524 40.5
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.4e-91 341.3 525 38.9
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 1.4e-91 341.3 523 40.7
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 5.2e-91 339.3 523 40.3
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 6.8e-91 339.0 522 39.3
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 4.4e-90 336.3 530 39.6
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 7.5e-90 335.5 533 41.5
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 2.2e-89 334.0 525 38.9
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 2.2e-89 334.0 527 40.2
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 2.8e-89 333.6 588 37.8
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 3.7e-89 333.2 606 37.8
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.9e-89 332.8 521 40.7
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 6.3e-89 332.4 501 42.1
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 8.3e-89 332.0 540 40.4
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 3.1e-88 330.1 528 38.1
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 3.1e-88 330.1 528 38.1
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 1.2e-87 328.2 503 40.2
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 1.6e-87 327.8 511 40.3
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 2.7e-87 327.0 525 39.2
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 2.3e-86 323.9 523 38.6
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 6.6e-86 322.4 501 40.1
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 4.3e-85 319.7 523 38.8
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 5.6e-85 319.3 521 39.2
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 9.5e-85 318.5 521 38.8
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 8.0e-84 315.5 522 38.7
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 3.5e-79 300.1 432 41.9
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 3.5e-79 300.1 523 37.3
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 8.6e-78 295.4 435 39.8
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 7.3e-77 292.4 506 39.5
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 1.2e-76 291.6 469 39.4
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 3.4e-74 283.5 596 33.1
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.4e-72 277.3 505 37.8
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.9e-69 267.7 521 34.2
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 7.3e-69 265.8 289 50.2
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.6e-68 264.6 521 33.4
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 4.1e-64 250.0 387 39.0
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 5.4e-64 249.6 273 49.8
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 1.9e-56 224.6 455 35.6
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.0e-54 218.8 520 35.4
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 4.3e-53 213.4 313 41.9
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.1e-52 211.1 248 47.2
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 1.1e-51 208.8 529 35.2
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 2.3e-46 191.0 523 28.9
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 8.4e-33 146.0 147 50.3
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 2.6e-26 124.4 245 34.7
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 4.5e-26 123.6 91 63.7
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 3.7e-20 104.0 103 50.5
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.4e-19 101.3 89 58.4
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 3.1e-19 100.9 333 26.1
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.0e-14 84.3 286 24.8
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 2.0e-13 81.6 195 33.3
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 9.7e-13 79.3 195 32.8
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 2.8e-12 77.8 148 37.8
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 2.0e-10 71.6 107 38.3
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 4.2e-08 63.9 62 45.2
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 7.2e-08 63.2 59 45.8
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.6e-07 62.0 36 69.4
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.6e-07 62.0 95 37.9
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 3.0e-06 57.8 113 33.6


User provided reference genes

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