Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 3.0e-188 661.8 345 100.0
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 2.3e-108 396.4 303 64.7
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.5e-107 393.7 302 63.9
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 4.4e-107 392.1 302 62.3
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 7.4e-107 391.3 304 62.8
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 7.4e-107 391.3 302 62.9
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 9.7e-107 391.0 303 62.0
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 2.8e-106 389.4 303 62.4
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 4.8e-106 388.7 305 62.0
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 8.2e-106 387.9 305 62.0
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 8.2e-106 387.9 309 60.5
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 1.1e-105 387.5 302 62.3
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 2.4e-105 386.3 302 61.9
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 2.4e-105 386.3 302 62.6
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 3.1e-105 386.0 303 61.1
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 5.3e-105 385.2 303 61.7
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 5.3e-105 385.2 302 61.3
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 7.0e-105 384.8 304 61.5
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 9.1e-105 384.4 302 60.9
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.2e-104 384.0 303 62.4
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.2e-104 384.0 309 61.8
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.6e-104 383.6 303 61.1
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.6e-104 383.6 302 61.3
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 1.6e-104 383.6 302 60.9
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 2.0e-104 383.3 302 61.3
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 2.0e-104 383.3 302 60.9
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 2.6e-104 382.9 310 59.4
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.5e-104 382.5 303 61.4
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 3.5e-104 382.5 310 61.0
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 4.5e-104 382.1 304 60.9
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 4.5e-104 382.1 303 61.1
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 5.9e-104 381.7 303 62.0
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 5.9e-104 381.7 302 62.3
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 5.9e-104 381.7 303 60.7
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 5.9e-104 381.7 302 61.3
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 5.9e-104 381.7 303 61.4
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 7.7e-104 381.3 302 60.6
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.0e-103 380.9 302 60.6
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.3e-103 380.6 303 61.7
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 1.3e-103 380.6 308 60.7
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 1.3e-103 380.6 303 59.4
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.3e-103 380.6 303 61.1
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 1.7e-103 380.2 304 59.5
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 1.7e-103 380.2 302 61.6
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 1.7e-103 380.2 302 60.3
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 2.2e-103 379.8 303 61.4
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 5.0e-103 378.6 305 61.3
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 6.5e-103 378.3 305 60.0
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 8.5e-103 377.9 303 61.1
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 8.5e-103 377.9 302 60.3
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 8.5e-103 377.9 302 60.6
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 8.5e-103 377.9 303 61.4
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 1.1e-102 377.5 303 63.0
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 1.1e-102 377.5 309 61.2
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.1e-102 377.5 309 60.8
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.1e-102 377.5 303 60.4
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.1e-102 377.5 306 61.1
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.5e-102 377.1 306 59.8
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 1.9e-102 376.7 298 61.7
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 2.5e-102 376.3 303 62.4
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.2e-102 375.9 303 59.1
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 4.2e-102 375.6 304 60.9
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 5.5e-102 375.2 302 58.9
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 5.5e-102 375.2 309 60.5
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 5.5e-102 375.2 303 60.1
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 5.5e-102 375.2 302 61.6
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 7.2e-102 374.8 301 60.8
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 7.2e-102 374.8 304 59.2
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 1.2e-101 374.0 302 59.6
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.2e-101 374.0 302 60.6
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 1.2e-101 374.0 302 60.3
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 1.2e-101 374.0 306 60.5
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 1.2e-101 374.0 303 60.4
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 1.6e-101 373.6 303 61.1
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 3.6e-101 372.5 317 59.3
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 4.7e-101 372.1 304 59.9
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 6.1e-101 371.7 292 62.0
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 8.0e-101 371.3 307 59.0
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 8.0e-101 371.3 290 62.4
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 1.4e-100 370.5 301 58.5
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 2.3e-100 369.8 291 61.9
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 2.3e-100 369.8 301 60.8
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 3.0e-100 369.4 307 60.6
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 6.7e-100 368.2 304 59.9
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 1.5e-99 367.1 290 61.7
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 1.5e-99 367.1 290 61.7
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 2.0e-99 366.7 290 61.7
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 2.0e-99 366.7 302 57.0
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.6e-99 366.3 340 55.6
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 3.3e-99 365.9 296 61.5
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 3.3e-99 365.9 232 72.0
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 4.4e-99 365.5 321 55.5
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 5.7e-99 365.2 300 60.0
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 5.7e-99 365.2 306 60.5
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.3e-98 364.0 246 68.3
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.3e-98 364.0 332 55.4
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 2.2e-98 363.2 284 61.6
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 2.2e-98 363.2 309 59.5
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 4.8e-98 362.1 310 61.3
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 6.3e-98 361.7 246 67.9
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 8.2e-98 361.3 302 58.6
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 8.2e-98 361.3 296 61.1
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 1.8e-97 360.1 293 60.8
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 3.5e-96 355.9 361 51.2
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 4.5e-96 355.5 290 62.1
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 5.9e-96 355.1 286 61.9
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 1.7e-95 353.6 246 65.9
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 4.7e-93 345.5 291 60.1
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 4.4e-91 339.0 305 56.1
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 7.7e-88 328.2 241 65.6
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 5.0e-87 325.5 303 55.8
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 8.6e-79 298.1 233 60.9
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 2.6e-75 286.6 304 51.0
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 1.3e-71 274.2 210 63.8
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 3.1e-68 263.1 173 72.8
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 2.4e-65 253.4 214 58.4
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 3.5e-64 249.6 200 62.0
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 4.3e-62 242.7 196 61.7
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.8e-60 237.3 202 59.9
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.3e-60 236.9 202 59.4
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.3e-58 231.1 245 47.8
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 2.4e-52 210.3 183 57.4
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 7.6e-51 205.3 201 50.2
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.7e-47 194.1 162 58.0
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 6.6e-47 192.2 160 62.5
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 2.0e-43 180.6 159 56.6
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 4.4e-43 179.5 158 56.3
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 7.1e-25 119.0 88 62.5
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 9.3e-25 118.6 73 72.6
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 2.4e-12 77.4 51 62.7
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 8.5e-10 68.9 93 41.9


User provided reference genes

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