Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 8.6e-218 760.0 373 100.0
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 6.4e-88 328.6 229 65.9
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 2.6e-81 306.6 238 61.8
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.7e-72 277.3 241 55.6
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 3.8e-72 276.2 241 54.4
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 2.3e-69 266.9 232 54.3
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 5.1e-69 265.8 288 48.6
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 8.7e-69 265.0 294 49.0
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.1e-68 264.6 267 48.7
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 1.1e-68 264.6 272 49.6
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 2.5e-68 263.5 270 51.9
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 2.1e-67 260.4 253 50.2
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 3.7e-67 259.6 229 55.0
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 3.7e-67 259.6 245 52.2
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 4.8e-67 259.2 282 47.9
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 6.2e-67 258.8 265 50.6
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 8.1e-67 258.5 264 48.1
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 1.1e-66 258.1 242 52.1
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.1e-66 258.1 270 50.4
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 1.4e-66 257.7 265 50.6
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 1.8e-66 257.3 268 49.6
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 2.4e-66 256.9 232 54.7
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 2.4e-66 256.9 276 47.5
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 2.4e-66 256.9 271 49.8
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 2.4e-66 256.9 271 49.8
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 9.0e-66 255.0 229 55.0
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.5e-65 254.2 234 52.1
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 2.0e-65 253.8 236 52.5
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 4.5e-65 252.7 235 49.8
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 5.8e-65 252.3 271 49.4
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 7.6e-65 251.9 235 52.8
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.3e-64 251.1 231 54.5
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.7e-64 250.8 268 50.0
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 2.2e-64 250.4 233 54.5
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 2.9e-64 250.0 234 52.6
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 2.9e-64 250.0 236 53.8
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 2.9e-64 250.0 231 51.9
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 3.8e-64 249.6 235 53.2
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.8e-64 249.6 248 48.8
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 4.9e-64 249.2 235 51.1
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 6.4e-64 248.8 236 49.6
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 6.4e-64 248.8 273 46.2
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 6.4e-64 248.8 276 48.2
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.1e-63 248.1 257 49.0
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.1e-63 248.1 241 51.0
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 1.1e-63 248.1 236 52.5
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.4e-63 247.7 229 53.3
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 1.4e-63 247.7 229 53.7
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 1.9e-63 247.3 230 54.3
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.9e-63 247.3 242 50.8
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 2.4e-63 246.9 229 53.7
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.4e-63 246.9 233 53.6
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 3.2e-63 246.5 283 46.3
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 7.1e-63 245.4 235 50.6
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 9.3e-63 245.0 267 47.2
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 1.2e-62 244.6 241 51.5
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 1.2e-62 244.6 242 50.4
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.2e-62 244.6 259 47.1
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.2e-62 244.6 240 48.8
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.6e-62 244.2 234 51.3
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.6e-62 244.2 234 51.3
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.6e-62 244.2 234 51.3
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.6e-62 244.2 265 47.9
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 1.6e-62 244.2 229 53.3
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 2.1e-62 243.8 234 51.3
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 2.7e-62 243.4 253 48.2
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 4.6e-62 242.7 265 47.5
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 4.6e-62 242.7 236 51.3
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 6.0e-62 242.3 230 53.5
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 1.3e-61 241.1 242 48.8
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 1.8e-61 240.7 235 50.6
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 3.9e-61 239.6 282 47.2
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 5.1e-61 239.2 252 48.8
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 6.7e-61 238.8 225 53.8
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 1.1e-60 238.0 229 53.7
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 1.5e-60 237.7 243 50.2
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 1.5e-60 237.7 256 48.4
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 1.5e-60 237.7 238 50.4
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 5.6e-60 235.7 242 50.8
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 7.4e-60 235.3 268 45.1
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.3e-59 234.6 219 51.1
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.6e-59 234.2 267 47.2
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 2.1e-59 233.8 232 52.2
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 2.8e-59 233.4 236 48.7
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 3.7e-59 233.0 263 46.4
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 4.8e-59 232.6 230 50.0
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 5.3e-58 229.2 230 52.2
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 1.2e-57 228.0 231 50.6
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 2.0e-57 227.3 231 50.6
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.0e-57 227.3 280 45.4
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 4.5e-57 226.1 292 43.8
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 4.9e-56 222.6 286 42.7
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 2.5e-55 220.3 225 50.2
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 2.5e-55 220.3 225 50.2
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 2.5e-55 220.3 225 50.2
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.6e-54 217.6 229 52.4
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 1.6e-54 217.6 260 45.8
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 3.0e-53 213.4 253 46.2
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 4.8e-51 206.1 235 46.4
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 6.3e-51 205.7 230 47.8
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 9.0e-50 201.8 270 43.0
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.2e-49 201.4 182 55.5
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 2.6e-49 200.3 272 42.3
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 3.4e-49 199.9 244 45.9
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 4.5e-49 199.5 244 45.9
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 7.7e-49 198.7 211 47.9
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 8.5e-48 195.3 181 55.8
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 5.5e-47 192.6 182 53.8
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 9.4e-47 191.8 189 52.9
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 8.8e-45 185.3 189 52.4
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 2.6e-36 157.1 397 29.2
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 8.5e-32 142.1 181 42.5
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 7.2e-31 139.0 229 38.4
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 3.9e-29 133.3 158 44.3
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 1.5e-28 131.3 161 42.2
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 4.8e-27 126.3 90 64.4
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 8.2e-27 125.6 162 41.4
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 1.4e-26 124.8 78 71.8
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.0e-25 120.9 75 73.3
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.3e-24 118.2 150 39.3
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.7e-24 117.9 145 40.7
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.9e-24 117.1 75 68.0
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 2.9e-24 117.1 104 47.1
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 2.9e-24 117.1 75 66.7
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 4.2e-23 113.2 135 45.9
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 1.2e-22 111.7 82 58.5
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 5.7e-20 102.8 77 63.6
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 5.7e-20 102.8 77 63.6
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 5.7e-20 102.8 77 63.6
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.2e-19 100.9 67 71.6
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 9.1e-18 95.5 114 44.7
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 4.0e-13 80.1 67 56.7
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 3.7e-11 73.6 42 73.8
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 4.8e-11 73.2 73 50.7
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.1e-10 72.0 59 57.6
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 7.0e-10 69.3 93 44.1
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 9.1e-10 68.9 46 65.2
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 1.7e-08 64.7 51 52.9
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 2.3e-08 64.3 215 25.1
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 1.5e-07 61.6 94 38.3
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 3.3e-07 60.5 56 46.4
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.6e-06 58.2 197 25.4


User provided reference genes

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