Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 0.0e+00 1142.1 555 100.0
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 2.7e-199 699.1 522 62.1
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 8.4e-193 677.6 526 59.1
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 7.9e-175 617.8 534 55.2
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 1.5e-173 613.6 523 54.5
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 5.6e-173 611.7 535 54.2
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 7.4e-173 611.3 534 54.5
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 2.1e-172 609.8 508 57.5
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 8.1e-172 607.8 518 54.6
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 1.8e-171 606.7 530 54.2
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 4.0e-171 605.5 518 54.4
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 6.9e-171 604.7 527 54.6
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 2.0e-170 603.2 549 52.8
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 9.9e-170 600.9 523 53.3
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 9.9e-170 600.9 523 53.3
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 9.9e-170 600.9 535 53.8
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 4.9e-169 598.6 520 55.0
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 1.1e-168 597.4 498 55.0
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 1.9e-168 596.7 527 52.9
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 3.2e-168 595.9 529 53.7
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 4.2e-168 595.5 520 54.0
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 7.1e-168 594.7 529 53.7
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 7.1e-168 594.7 520 55.2
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 9.3e-168 594.3 527 53.1
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.6e-167 593.6 524 53.6
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 3.5e-167 592.4 528 52.8
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 6.0e-167 591.7 527 52.8
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 1.8e-166 590.1 526 52.9
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 2.3e-166 589.7 527 52.0
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.9e-166 589.0 523 53.0
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 3.9e-166 589.0 521 53.2
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 8.7e-166 587.8 520 53.3
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 8.7e-166 587.8 528 52.5
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 8.7e-166 587.8 520 52.9
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.1e-165 587.4 520 53.7
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 1.1e-165 587.4 533 52.2
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 1.9e-165 586.6 516 54.7
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.9e-165 586.6 514 54.7
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 2.5e-165 586.3 527 52.4
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 2.5e-165 586.3 524 54.2
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 3.3e-165 585.9 532 52.6
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 9.6e-165 584.3 487 55.4
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 1.6e-164 583.6 527 51.2
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.6e-164 583.6 527 53.7
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 2.1e-164 583.2 528 52.8
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 2.8e-164 582.8 473 56.7
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 2.8e-164 582.8 514 54.5
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 3.7e-164 582.4 528 51.7
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 3.7e-164 582.4 528 52.1
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 3.7e-164 582.4 528 52.1
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 8.2e-164 581.3 528 51.5
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 8.2e-164 581.3 524 53.8
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 8.2e-164 581.3 523 52.2
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 1.8e-163 580.1 528 52.8
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 4.0e-163 578.9 528 52.3
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 6.9e-163 578.2 536 52.4
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 6.9e-163 578.2 524 53.4
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 9.0e-163 577.8 528 52.5
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 9.0e-163 577.8 475 56.2
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.2e-162 577.4 525 52.6
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 1.2e-162 577.4 526 51.3
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.5e-162 577.0 514 54.5
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 2.6e-162 576.2 524 52.9
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.6e-162 576.2 545 50.8
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 2.6e-162 576.2 528 51.3
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 4.5e-162 575.5 583 47.9
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 4.5e-162 575.5 526 52.1
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 5.8e-162 575.1 513 53.2
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 5.8e-162 575.1 524 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 4.9e-161 572.0 440 61.1
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 8.4e-161 571.2 513 53.2
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.1e-159 566.6 523 51.2
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 2.7e-159 566.2 541 50.1
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 7.9e-159 564.7 553 50.1
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 7.9e-159 564.7 552 50.2
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.0e-158 564.3 517 53.4
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 3.0e-158 562.8 516 53.5
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 7.4e-157 558.1 518 53.1
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 9.7e-157 557.8 527 51.2
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 2.8e-156 556.2 516 52.3
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 5.0e-153 545.4 547 47.5
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 8.5e-153 544.7 438 56.4
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 4.2e-152 542.3 526 49.2
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 7.2e-152 541.6 434 56.7
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 4.6e-151 538.9 568 47.9
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 8.8e-150 534.6 528 50.0
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 5.7e-149 531.9 507 51.7
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 1.9e-144 516.9 522 50.0
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 2.8e-140 503.1 527 48.6
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 3.7e-140 502.7 503 49.7
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 4.8e-140 502.3 568 45.1
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.3e-137 494.2 543 45.7
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 3.8e-137 492.7 522 47.3
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 1.1e-136 491.1 416 56.0
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 1.2e-135 487.6 493 49.3
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 8.0e-135 485.0 401 54.4
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 2.6e-133 479.9 394 55.1
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.6e-130 470.7 504 47.6
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 7.7e-130 468.4 604 41.4
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.5e-125 454.1 581 42.2
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 8.2e-124 448.4 528 44.9
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 7.0e-115 418.7 492 44.7
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.0e-109 400.6 366 50.8
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.3e-108 397.9 327 54.7
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 9.5e-104 381.7 518 40.2
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 9.5e-104 381.7 285 58.6
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.1e-103 380.6 306 56.2
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.6e-103 379.8 343 51.6
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.2e-93 348.2 360 48.1
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.4e-93 346.3 523 38.4
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.6e-90 337.8 345 47.0
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 3.5e-90 336.7 543 37.8
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 8.9e-86 322.0 254 57.1
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 3.7e-84 316.6 231 62.8
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 1.3e-81 308.1 222 61.7
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 2.5e-80 303.9 282 50.0
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.4e-78 297.4 221 59.7
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.4e-78 297.4 221 59.7
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 3.4e-77 293.5 564 34.2
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 6.4e-76 289.3 491 35.8
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 9.9e-69 265.4 515 32.0
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 1.1e-51 208.8 207 50.2
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 9.3e-51 205.7 201 48.3
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 3.5e-50 203.8 170 56.5
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 3.5e-50 203.8 158 57.6
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.9e-50 202.6 201 47.3
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 5.8e-45 186.4 230 42.6
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 1.2e-42 178.7 526 25.9
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 8.5e-36 156.0 350 32.3
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 7.9e-34 149.4 250 35.2
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.8e-30 138.3 85 63.5
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 8.5e-28 129.4 343 27.1
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 5.7e-24 116.7 176 39.8
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 1.0e-20 105.9 99 53.5
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.9e-20 104.4 103 48.5
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 7.2e-19 99.8 96 52.1
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.0e-17 95.9 107 53.3
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 3.0e-17 94.4 119 40.3
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 3.9e-17 94.0 108 43.5
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 7.7e-13 79.7 191 29.8
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.7e-12 78.6 87 44.8
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 9.4e-11 72.8 41 58.5
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.0e-10 69.7 180 27.2
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 1.8e-09 68.6 63 55.6
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 8.8e-09 66.2 51 56.9


User provided reference genes

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