Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.2e-123 445.7 232 100.0
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 7.0e-109 397.5 243 88.1
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.3e-94 347.4 178 100.0
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 4.1e-69 265.4 241 58.5
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 4.4e-63 245.4 242 57.0
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.3e-62 243.8 243 57.2
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 8.4e-62 241.1 242 55.0
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 1.4e-61 240.4 242 56.2
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.9e-61 240.0 242 55.8
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 1.9e-61 240.0 242 55.4
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.4e-61 239.6 242 56.2
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.4e-61 239.6 242 56.2
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.4e-61 239.6 242 55.4
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 3.2e-61 239.2 242 55.4
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 3.2e-61 239.2 244 56.1
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 5.4e-61 238.4 242 55.0
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.1e-61 238.0 246 55.7
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 9.2e-61 237.7 246 55.7
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 9.2e-61 237.7 241 51.5
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 9.2e-61 237.7 242 55.4
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 9.2e-61 237.7 241 52.3
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.6e-60 236.9 242 55.8
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.6e-60 236.9 242 55.4
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.1e-60 236.5 242 55.4
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 2.1e-60 236.5 241 54.4
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.7e-60 236.1 242 55.0
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 3.5e-60 235.7 242 52.5
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 3.5e-60 235.7 244 55.7
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 4.6e-60 235.3 241 51.5
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 4.6e-60 235.3 242 52.1
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 4.6e-60 235.3 242 55.0
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 6.0e-60 235.0 242 54.1
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 6.0e-60 235.0 242 51.7
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 7.8e-60 234.6 241 51.0
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.0e-59 234.2 241 53.1
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.0e-59 234.2 242 54.1
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.3e-59 233.8 242 52.1
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 1.3e-59 233.8 244 55.3
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 1.3e-59 233.8 242 54.1
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.3e-59 233.8 241 54.4
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 2.3e-59 233.0 244 54.9
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 2.3e-59 233.0 242 52.9
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 3.0e-59 232.6 242 53.3
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 3.0e-59 232.6 242 51.7
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 3.0e-59 232.6 242 54.5
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 3.0e-59 232.6 242 53.7
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 3.9e-59 232.3 242 50.8
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 5.1e-59 231.9 242 54.1
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 6.6e-59 231.5 242 53.3
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 6.6e-59 231.5 246 54.1
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 6.6e-59 231.5 242 53.7
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 8.7e-59 231.1 242 53.7
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 1.1e-58 230.7 243 53.9
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.5e-58 230.3 242 51.7
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.5e-58 230.3 242 54.5
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.5e-58 230.3 242 52.5
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.5e-58 230.3 242 52.5
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 2.5e-58 229.6 242 51.7
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.5e-58 229.6 242 52.9
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 3.3e-58 229.2 242 53.7
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 3.3e-58 229.2 242 53.7
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 4.3e-58 228.8 242 54.5
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 4.3e-58 228.8 242 54.5
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 4.3e-58 228.8 242 52.9
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 5.6e-58 228.4 241 53.1
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 7.3e-58 228.0 217 56.7
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 7.3e-58 228.0 242 54.1
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 9.6e-58 227.6 242 50.8
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 9.6e-58 227.6 242 50.8
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.6e-57 226.9 242 53.3
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 1.6e-57 226.9 242 53.7
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 2.1e-57 226.5 241 50.6
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 2.1e-57 226.5 245 54.3
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 3.6e-57 225.7 242 52.9
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 4.7e-57 225.3 242 52.5
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 4.7e-57 225.3 241 49.8
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 6.2e-57 224.9 242 52.9
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 1.1e-56 224.2 242 51.7
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 1.1e-56 224.2 242 52.5
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.4e-56 223.8 242 52.5
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.8e-56 223.4 242 51.2
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 2.4e-56 223.0 242 52.1
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 3.1e-56 222.6 242 51.7
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 4.0e-56 222.2 242 52.1
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 5.2e-56 221.9 242 50.8
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 6.9e-56 221.5 242 51.7
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 9.0e-56 221.1 237 51.1
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 9.0e-56 221.1 242 50.8
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 1.2e-55 220.7 237 51.1
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.5e-55 220.3 242 53.3
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.5e-55 220.3 242 53.3
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 2.6e-55 219.5 242 51.7
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 2.6e-55 219.5 242 51.2
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 4.4e-55 218.8 241 51.9
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 5.8e-55 218.4 237 50.6
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 9.9e-55 217.6 237 50.2
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.8e-54 215.7 219 53.4
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 1.1e-53 214.2 242 50.4
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.4e-53 213.8 243 51.4
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.4e-53 213.8 241 48.5
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.2e-53 212.6 241 48.1
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.2e-53 212.6 241 48.1
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 5.4e-53 211.8 254 45.3
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 2.1e-52 209.9 242 50.0
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 3.9e-51 205.7 241 48.5
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 1.1e-50 204.1 240 47.9
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 5.6e-50 201.8 242 47.9
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.6e-49 200.3 263 44.1
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.8e-49 199.5 242 49.6
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 6.2e-49 198.4 302 43.4
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 8.1e-49 198.0 271 45.8
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.1e-42 177.6 242 43.0
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 2.5e-42 176.4 244 45.9
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 7.4e-42 174.9 241 42.7
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 6.2e-41 171.8 243 45.3
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 8.4e-38 161.4 164 52.4
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 3.9e-35 152.5 244 40.6
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 5.1e-35 152.1 179 51.4
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 7.4e-34 148.3 197 44.7
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 8.2e-33 144.8 164 52.4
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 4.5e-31 139.0 188 46.8
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 7.1e-29 131.7 141 54.6
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 6.7e-27 125.2 242 36.4
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 6.3e-25 118.6 242 33.5
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 1.5e-23 114.0 226 35.0
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 5.0e-22 109.0 122 53.3
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 6.5e-22 108.6 119 54.6
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 9.4e-21 104.8 125 51.2
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 7.4e-18 95.1 77 50.6
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 7.4e-18 95.1 123 48.8
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 4.4e-10 69.3 59 59.3
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 3.1e-08 63.2 83 48.2
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 5.3e-08 62.4 65 52.3
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 2.6e-07 60.1 78 44.9
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 3.4e-07 59.7 77 37.7
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.0e-06 58.2 55 58.2
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 2.2e-06 57.0 130 35.4
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 3.8e-06 56.2 210 27.1
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 5.0e-06 55.8 43 53.5
BcaB06g28816 Brassica carinata HOM05D004145 ORTHO05D004879 6.5e-06 55.5 111 34.2
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 8.5e-06 55.1 201 23.4


User provided reference genes

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