Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.3e-196 688.7 352 100.0
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.3e-151 539.3 394 76.1
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.8e-93 346.3 178 100.0
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 4.6e-80 302.4 397 45.8
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.4e-73 280.8 377 44.3
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 8.8e-71 271.6 397 42.6
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.1e-70 271.2 397 42.3
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 4.3e-70 269.2 361 44.0
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 4.3e-70 269.2 361 44.0
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 4.8e-69 265.8 395 42.0
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 6.3e-69 265.4 395 42.5
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 1.1e-68 264.6 405 42.0
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.4e-68 264.2 401 40.1
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.4e-68 263.5 395 42.0
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 3.1e-68 263.1 419 39.9
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 5.3e-68 262.3 402 41.0
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 9.1e-68 261.5 400 42.0
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 9.1e-68 261.5 394 41.1
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.2e-67 261.2 396 41.2
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 1.2e-67 261.2 396 40.9
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.5e-67 260.8 400 40.2
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.0e-67 260.4 406 38.9
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 2.6e-67 260.0 395 41.0
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 4.5e-67 259.2 409 39.6
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 4.5e-67 259.2 407 40.3
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 5.9e-67 258.8 403 41.9
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.0e-66 258.1 405 38.0
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 1.3e-66 257.7 395 40.3
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.7e-66 257.3 395 40.8
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 2.2e-66 256.9 395 38.5
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 3.8e-66 256.1 406 39.2
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.8e-66 256.1 411 40.1
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 3.8e-66 256.1 408 40.2
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 6.5e-66 255.4 400 41.2
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 8.5e-66 255.0 408 37.7
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 8.5e-66 255.0 397 41.1
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 8.5e-66 255.0 394 39.8
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.4e-65 254.2 411 39.7
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 1.4e-65 254.2 394 40.1
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.9e-65 253.8 399 40.9
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 1.9e-65 253.8 411 39.7
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.9e-65 253.8 411 40.6
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 1.9e-65 253.8 395 40.3
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 2.5e-65 253.4 400 39.0
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.5e-65 253.4 399 40.1
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 3.2e-65 253.1 399 39.3
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 3.2e-65 253.1 392 39.3
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 4.2e-65 252.7 393 40.7
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 4.2e-65 252.7 405 38.8
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 5.5e-65 252.3 403 38.7
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 7.2e-65 251.9 396 40.2
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 7.2e-65 251.9 393 39.9
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.2e-64 251.1 393 39.4
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.6e-64 250.8 395 39.0
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.6e-64 250.8 393 40.7
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 2.1e-64 250.4 394 40.9
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 2.1e-64 250.4 354 42.9
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 2.1e-64 250.4 394 39.6
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 3.6e-64 249.6 413 38.3
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 4.7e-64 249.2 406 39.7
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 7.9e-64 248.4 407 39.6
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 1.0e-63 248.1 408 37.3
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 2.3e-63 246.9 408 37.3
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.3e-63 246.9 395 40.3
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 3.0e-63 246.5 407 37.6
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 5.1e-63 245.7 393 40.2
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 6.7e-63 245.4 395 37.5
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 6.7e-63 245.4 397 39.0
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 8.8e-63 245.0 397 38.5
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 1.1e-62 244.6 394 37.6
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.5e-62 244.2 399 38.6
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.5e-62 244.2 401 40.4
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 1.5e-62 244.2 322 44.1
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.0e-62 243.8 401 40.4
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 2.0e-62 243.8 358 41.6
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 2.0e-62 243.8 392 38.5
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.3e-62 243.0 395 39.7
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 5.7e-62 242.3 396 38.6
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 7.4e-62 241.9 329 43.5
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.7e-61 240.7 397 38.5
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 3.7e-61 239.6 393 39.2
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 3.7e-61 239.6 398 38.9
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.1e-60 238.0 419 36.3
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 3.1e-60 236.5 321 40.8
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 9.1e-60 235.0 397 38.0
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 1.2e-59 234.6 326 40.2
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 1.2e-59 234.6 319 41.4
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 2.0e-59 233.8 318 41.8
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 2.6e-59 233.4 318 41.8
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 7.7e-59 231.9 330 41.5
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 1.7e-58 230.7 330 41.8
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 1.7e-58 230.7 321 39.9
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 2.2e-58 230.3 394 37.1
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.9e-57 227.3 320 40.6
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.2e-57 226.5 407 38.1
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 4.2e-57 226.1 399 38.8
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 7.2e-57 225.3 320 40.6
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 7.2e-57 225.3 320 40.6
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.6e-56 224.2 402 38.8
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.6e-56 224.2 391 39.1
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 4.7e-56 222.6 320 40.3
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 6.1e-56 222.2 391 38.6
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 8.0e-56 221.9 428 36.7
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 1.0e-55 221.5 362 37.8
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.4e-55 221.1 382 39.0
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.3e-55 220.3 392 38.5
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 2.3e-55 220.3 362 40.9
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 3.0e-55 219.9 402 35.6
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 1.5e-54 217.6 407 35.6
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 2.6e-54 216.9 377 41.6
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.7e-54 215.7 390 35.6
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.7e-53 214.2 390 35.4
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 2.8e-53 213.4 387 35.7
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.7e-53 213.0 457 35.0
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.2e-51 208.0 209 60.3
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 1.6e-51 207.6 367 37.1
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.9e-49 200.7 330 38.5
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 2.1e-48 197.2 401 35.2
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.8e-44 184.1 337 39.5
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 5.0e-42 176.0 312 36.9
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 1.0e-39 168.3 327 38.2
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 2.3e-39 167.2 300 36.0
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 4.3e-33 146.4 230 33.5
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 2.1e-32 144.1 353 31.7
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 8.6e-26 122.1 197 39.1
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 7.5e-22 109.0 122 53.3
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.4e-20 104.8 125 51.2
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 1.3e-18 98.2 181 35.4
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.1e-17 95.1 123 48.8
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 4.7e-16 89.7 100 50.0
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 3.0e-10 70.5 105 37.1
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 2.8e-08 63.9 94 43.6
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 4.7e-08 63.2 51 62.7
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.1e-07 62.0 100 36.0
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.8e-07 61.2 49 55.1
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 5.2e-07 59.7 60 53.3
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 3.4e-06 57.0 112 32.1


User provided reference genes

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