Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0049s0090 Marchantia polymorpha HOM05D000104 ORTHO05D048811 3.0e-34 147.9 72 100.0
Pp3c10_6710 Physcomitrium patens HOM05D000104 ORTHO05D008354 2.3e-10 68.6 67 49.3
AT2G44980 Arabidopsis thaliana HOM05D000104 ORTHO05D008354 9.7e-09 63.2 67 47.8
Thecc.01G387600 Theobroma cacao HOM05D000104 ORTHO05D008354 9.7e-09 63.2 63 49.2
Duzib133G0313 Durio zibethinus HOM05D000104 ORTHO05D008354 1.7e-08 62.4 63 50.8
C04p05940 Brassica napus HOM05D000104 ORTHO05D008354 2.2e-08 62.0 70 44.3
BolC4t22225H Brassica oleracea HOM05D000104 ORTHO05D008354 2.2e-08 62.0 70 44.3
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.1e-07 59.7 63 47.6
Haze_02745 Corylus avellana HOM05D000104 ORTHO05D013430 1.4e-07 59.3 63 49.2
Dinv44094 Davidia involucrata HOM05D000104 ORTHO05D008354 1.4e-07 59.3 63 46.0
A05p05090 Brassica napus HOM05D000104 ORTHO05D008354 1.8e-07 58.9 70 41.4
Aa31LG1G26570 Aethionema arabicum HOM05D000104 ORTHO05D008354 2.4e-07 58.5 67 43.3
BraA05t19483Z Brassica rapa HOM05D000104 ORTHO05D008354 2.4e-07 58.5 70 41.4
RcHm_v2.0_Chr1g0346091 Rosa chinensis HOM05D000104 ORTHO05D008354 2.4e-07 58.5 63 54.0
COL.COLO4_12448 Corchorus olitorius HOM05D000104 ORTHO05D008354 4.1e-07 57.8 62 48.4
SEGI_05219 Sequoiadendron giganteum HOM05D000104 ORTHO05D048811 4.1e-07 57.8 67 46.3
Ciclev10018815m.g Citrus clementina HOM05D000104 ORTHO05D008354 5.3e-07 57.4 67 44.8
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 5.3e-07 57.4 63 46.0
Sp4g27050 Schrenkiella parvula HOM05D000104 ORTHO05D008354 5.3e-07 57.4 67 44.8
Ca_07352_v3 Cicer arietinum L. HOM05D000104 ORTHO05D008354 6.9e-07 57.0 62 48.4
PGR004G1640 Punica granatum HOM05D000104 ORTHO05D008354 6.9e-07 57.0 67 44.8
QL04p034775 Quercus lobata HOM05D000104 ORTHO05D008354 6.9e-07 57.0 63 49.2
MD07G1098400 Malus domestica HOM05D000104 ORTHO05D008354 9.1e-07 56.6 63 49.2
Thhalv10001305m.g Eutrema salsugineum HOM05D000104 ORTHO05D008354 1.2e-06 56.2 67 44.8
FAN06G0717 Fragaria x ananassa HOM05D000104 ORTHO05D008354 1.2e-06 56.2 63 50.8
FAN06G1402 Fragaria x ananassa HOM05D000104 ORTHO05D008354 1.2e-06 56.2 63 50.8
THA.LOC104802482 Tarenaya hassleriana HOM05D000104 ORTHO05D008354 1.2e-06 56.2 67 46.3
AL4G44080 Arabidopsis lyrata HOM05D000104 ORTHO05D008354 1.5e-06 55.8 67 43.3
FAN10G0005 Fragaria x ananassa HOM05D000104 ORTHO05D008354 1.5e-06 55.8 63 50.8
CANSAT21G1228 Cannabis sativa HOM05D000104 ORTHO05D008354 2.0e-06 55.5 66 47.0
CARHR140240 Cardamine hirsuta HOM05D000104 ORTHO05D008354 2.0e-06 55.5 67 43.3
Psat3g158480 Pisum sativum HOM05D000104 ORTHO05D013430 2.0e-06 55.5 62 46.8
VMungo1383G2128 Vigna mungo HOM05D000104 ORTHO05D008354 2.0e-06 55.5 63 46.0
Manes.04G038200 Manihot esculenta HOM05D000104 ORTHO05D008354 2.6e-06 55.1 63 49.2
Nn1g00931 Nelumbo nucifera HOM05D000104 ORTHO05D008354 2.6e-06 55.1 67 44.8
Nitab4.5_0003110g0070 Nicotiana tabacum HOM05D000104 ORTHO05D008354 2.6e-06 55.1 58 53.4
ECA236G2937 Erigeron canadensis HOM05D000104 ORTHO05D008354 3.4e-06 54.7 46 56.5
FAN10G3495 Fragaria x ananassa HOM05D000104 ORTHO05D008354 3.4e-06 54.7 62 54.8
GSVIVG01018218001 Vitis vinifera HOM05D000104 ORTHO05D008354 3.4e-06 54.7 63 46.0
FvH4_7g09450 Fragaria vesca HOM05D000104 ORTHO05D008354 4.5e-06 54.3 63 49.2
Lj7C540T8 Lonicera japonica HOM05D000104 ORTHO05D008354 4.5e-06 54.3 68 42.6
Prupe.2G122400 Prunus persica HOM05D000104 ORTHO05D008354 4.5e-06 54.3 63 49.2
HPP92_022464 Vanilla planifolia HOM05D000104 ORTHO05D008354 4.5e-06 54.3 67 44.8
Aqoxy5G04143 Aquilegia oxysepala HOM05D000104 ORTHO05D008354 5.9e-06 53.9 67 44.8
MBI04_g09528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D008354 5.9e-06 53.9 38 60.5
TPR.G39130 Trifolium pratense HOM05D000104 ORTHO05D013430 5.9e-06 53.9 63 46.0
TAR503G0004 Trochodendron aralioides HOM05D000104 ORTHO05D008354 5.9e-06 53.9 67 46.3
CDE11G0513 Ceratophyllum demersum HOM05D000104 ORTHO05D008354 7.7e-06 53.5 34 70.6
Medtr7g039320 Medicago truncatula HOM05D000104 ORTHO05D008354 7.7e-06 53.5 63 44.4


User provided reference genes

Program Settings