Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 0.0e+00 1199.1 664 100.0
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 2.8e-54 217.6 178 59.0
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 2.3e-48 198.0 141 63.1
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 3.0e-48 197.6 403 35.0
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.1e-45 189.1 288 40.6
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.1e-45 189.1 143 60.1
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 1.1e-45 189.1 143 60.1
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 7.0e-45 186.4 197 48.7
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 2.0e-44 184.9 133 63.2
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 2.7e-44 184.5 175 52.0
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 2.7e-44 184.5 181 52.5
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 5.9e-44 183.3 178 51.7
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 5.9e-44 183.3 178 51.7
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 5.9e-44 183.3 175 52.6
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 7.7e-44 183.0 136 59.6
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 7.7e-44 183.0 337 35.9
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 2.9e-43 181.0 178 51.1
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 8.5e-43 179.5 136 59.6
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 8.5e-43 179.5 168 54.2
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.1e-42 179.1 164 54.3
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.1e-42 179.1 139 57.6
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.5e-42 178.7 136 58.8
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.9e-42 178.3 212 43.9
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 2.5e-42 177.9 168 53.0
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 3.2e-42 177.6 178 50.6
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 3.2e-42 177.6 137 58.4
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 4.2e-42 177.2 168 53.0
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.7e-41 173.7 136 55.9
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 4.7e-41 173.7 134 59.0
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 8.0e-41 172.9 141 56.0
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.4e-40 172.2 142 57.0
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 2.3e-40 171.4 145 54.5
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 3.0e-40 171.0 142 57.7
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 3.0e-40 171.0 184 47.8
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 3.0e-40 171.0 136 55.1
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 3.0e-40 171.0 136 55.1
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 4.0e-40 170.6 139 54.0
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 6.8e-40 169.9 143 57.3
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 1.2e-39 169.1 166 47.6
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.2e-39 169.1 166 47.6
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 1.5e-39 168.7 136 57.4
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 1.5e-39 168.7 209 45.5
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 2.0e-39 168.3 141 56.7
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 2.0e-39 168.3 136 57.4
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 2.6e-39 167.9 133 57.1
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.6e-39 167.9 142 52.8
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 3.4e-39 167.5 133 57.1
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 4.4e-39 167.2 136 57.4
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 4.4e-39 167.2 136 57.4
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 4.4e-39 167.2 144 54.2
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.4e-39 167.2 136 55.1
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.4e-39 167.2 136 55.1
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 4.4e-39 167.2 136 55.1
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 7.5e-39 166.4 174 47.7
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 7.5e-39 166.4 137 56.9
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 7.5e-39 166.4 142 55.6
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 7.5e-39 166.4 137 54.0
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 9.8e-39 166.0 173 48.6
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 9.8e-39 166.0 141 52.5
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.7e-38 165.2 151 53.6
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 2.2e-38 164.9 133 55.6
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 3.7e-38 164.1 133 55.6
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 4.9e-38 163.7 136 54.4
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.9e-38 163.7 136 54.4
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.1e-37 162.5 133 57.1
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.4e-37 162.2 186 45.7
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.4e-37 162.2 186 45.7
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.4e-37 162.2 186 45.7
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.8e-37 161.8 203 40.4
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.8e-37 161.8 137 54.0
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 1.8e-37 161.8 175 46.9
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.8e-37 161.8 135 55.6
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.8e-37 161.8 184 42.9
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 2.4e-37 161.4 136 55.1
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.4e-37 161.4 137 54.0
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 2.4e-37 161.4 326 33.7
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.4e-37 161.4 136 53.7
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 2.4e-37 161.4 136 55.9
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 3.1e-37 161.0 135 54.8
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 5.4e-37 160.2 102 70.6
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 7.0e-37 159.8 138 52.9
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 9.2e-37 159.5 137 53.3
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.2e-37 159.5 129 55.8
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.6e-36 158.7 138 52.9
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 2.0e-36 158.3 136 56.6
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 2.7e-36 157.9 137 52.6
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 2.7e-36 157.9 136 51.5
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 2.7e-36 157.9 136 51.5
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 2.7e-36 157.9 136 51.5
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 2.7e-36 157.9 136 51.5
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 4.5e-36 157.1 176 44.9
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 4.5e-36 157.1 133 48.9
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 1.3e-35 155.6 186 43.5
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 1.3e-35 155.6 133 54.1
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.3e-35 154.8 133 54.1
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 2.9e-35 154.5 235 37.9
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 3.8e-35 154.1 136 51.5
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 5.0e-35 153.7 133 51.9
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.5e-34 152.1 136 50.7
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.5e-34 151.4 136 50.7
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 5.6e-34 150.2 179 40.8
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 2.8e-33 147.9 136 53.7
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 3.6e-33 147.5 143 53.1
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 1.0e-32 146.0 155 43.2
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 2.3e-32 144.8 137 50.4
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 8.9e-32 142.9 176 41.5
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 2.6e-31 141.4 193 40.4
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 3.4e-31 141.0 131 48.9
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 9.8e-31 139.4 156 44.2
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.2e-30 138.3 98 63.3
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.2e-30 138.3 136 47.8
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 2.9e-30 137.9 138 47.1
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 4.9e-30 137.1 136 50.0
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 3.2e-29 134.4 105 59.0
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 9.2e-29 132.9 146 47.9
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 2.7e-28 131.3 99 55.6
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.0e-27 129.4 98 55.1
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 1.7e-27 128.6 139 45.3
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 3.3e-26 124.4 105 55.2
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 7.3e-26 123.2 95 57.9
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 7.3e-26 123.2 107 52.3
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.6e-25 122.1 95 55.8
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 2.1e-25 121.7 362 31.8
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 2.3e-24 118.2 98 53.1
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.5e-23 115.5 90 56.7
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 4.1e-21 107.5 103 48.5
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 9.2e-21 106.3 172 36.0
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 3.9e-19 100.9 136 40.4
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 3.9e-19 100.9 136 40.4
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 8.1e-17 93.2 101 47.5
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 3.1e-16 91.3 73 54.8
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 6.8e-16 90.1 111 43.2
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.7e-14 85.5 56 64.3
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 8.6e-11 73.2 105 41.9
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.9e-10 72.0 56 53.6
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 1.2e-09 69.3 127 36.2
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.2e-09 69.3 88 43.2
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.4e-08 65.9 189 28.6
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 2.0e-07 62.0 63 44.4
MCO02G309 Micromonas commoda HOM05D004639 ORTHO05D005201 1.3e-06 59.3 162 26.5


User provided reference genes

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