Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 6.6e-105 384.0 191 100.0
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 5.7e-48 194.9 163 66.9
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 1.5e-45 186.8 119 79.0
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 2.6e-45 186.0 142 69.7
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 1.3e-44 183.7 149 66.4
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 1.3e-44 183.7 175 60.6
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 1.7e-44 183.3 119 75.6
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 2.9e-44 182.6 124 76.6
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 2.9e-44 182.6 125 75.2
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 3.8e-44 182.2 129 73.6
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 3.8e-44 182.2 121 72.7
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 5.0e-44 181.8 129 73.6
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 5.0e-44 181.8 129 72.1
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 6.5e-44 181.4 109 81.7
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 1.1e-43 180.6 131 68.7
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 1.1e-43 180.6 107 84.1
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 1.1e-43 180.6 110 81.8
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 1.1e-43 180.6 122 77.0
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 1.4e-43 180.3 152 63.8
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 1.4e-43 180.3 122 77.0
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.9e-43 179.9 146 66.4
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 1.9e-43 179.9 135 71.1
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 1.9e-43 179.9 122 77.0
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.9e-43 179.9 118 77.1
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 1.9e-43 179.9 106 84.9
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 2.5e-43 179.5 149 66.4
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 2.5e-43 179.5 152 65.1
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 3.2e-43 179.1 126 74.6
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 3.2e-43 179.1 129 72.9
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 4.2e-43 178.7 122 77.0
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 4.2e-43 178.7 166 63.3
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 4.2e-43 178.7 120 78.3
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 4.2e-43 178.7 152 66.4
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 5.5e-43 178.3 121 75.2
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 5.5e-43 178.3 110 80.9
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 5.5e-43 178.3 109 80.7
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 5.5e-43 178.3 128 72.7
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 7.2e-43 177.9 110 80.9
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 7.2e-43 177.9 109 79.8
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 7.2e-43 177.9 118 77.1
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 9.3e-43 177.6 107 80.4
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 9.3e-43 177.6 119 73.9
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 9.3e-43 177.6 120 75.8
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 1.2e-42 177.2 107 81.3
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.2e-42 177.2 166 62.7
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 1.2e-42 177.2 119 74.8
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 1.2e-42 177.2 103 85.4
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 1.6e-42 176.8 120 75.0
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.6e-42 176.8 122 76.2
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 1.6e-42 176.8 153 63.4
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 2.1e-42 176.4 115 75.7
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.1e-42 176.4 126 73.8
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 2.7e-42 176.0 107 82.2
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 3.6e-42 175.6 122 73.8
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 3.6e-42 175.6 103 84.5
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 3.6e-42 175.6 122 73.8
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 3.6e-42 175.6 103 85.4
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 4.6e-42 175.3 130 71.5
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 6.1e-42 174.9 122 75.4
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 6.1e-42 174.9 123 73.2
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 7.9e-42 174.5 140 67.9
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 1.3e-41 173.7 107 80.4
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 2.3e-41 172.9 141 68.1
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 2.3e-41 172.9 122 74.6
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 3.9e-41 172.2 122 73.0
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 3.9e-41 172.2 119 75.6
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 5.1e-41 171.8 116 71.6
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 6.7e-41 171.4 107 77.6
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 6.7e-41 171.4 107 77.6
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 8.7e-41 171.0 123 74.0
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 2.5e-40 169.5 134 67.9
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 2.5e-40 169.5 103 81.6
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 4.3e-40 168.7 110 77.3
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 8.2e-39 164.5 111 75.7
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 1.4e-38 163.7 145 64.8
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.8e-38 163.3 107 77.6
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 3.1e-38 162.5 111 73.9
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 4.1e-38 162.2 107 76.6
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 5.3e-38 161.8 145 62.8
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 6.9e-38 161.4 109 75.2
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 6.9e-38 161.4 109 75.2
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 6.9e-38 161.4 109 75.2
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 1.5e-37 160.2 147 59.2
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 2.6e-37 159.5 107 75.7
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 4.5e-37 158.7 177 52.5
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 5.9e-37 158.3 111 74.8
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 5.9e-37 158.3 111 74.8
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 5.9e-37 158.3 122 70.5
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 7.7e-37 157.9 151 59.6
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 7.7e-37 157.9 127 66.9
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 1.0e-36 157.5 105 77.1
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.7e-36 156.8 106 75.5
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.7e-36 156.8 106 75.5
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.7e-36 156.8 106 75.5
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 1.7e-36 156.8 118 67.8
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 2.9e-36 156.0 126 65.1
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.8e-36 155.6 127 66.1
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 5.0e-36 155.2 105 76.2
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 5.0e-36 155.2 105 76.2
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 1.1e-35 154.1 118 68.6
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 3.0e-33 146.0 101 75.2
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 6.7e-33 144.8 115 65.2
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 2.0e-32 143.3 106 69.8
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 2.2e-28 129.8 115 61.7
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 1.1e-27 127.5 87 77.0
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.9e-27 126.7 124 61.3
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.5e-27 126.3 157 48.4
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 3.5e-21 105.9 67 77.6
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 4.5e-21 105.5 88 64.8
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 7.7e-21 104.8 85 64.7
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.0e-20 104.4 65 78.5
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.7e-20 103.6 103 55.3
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 2.9e-20 102.8 79 68.4
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 7.2e-19 98.2 109 55.0
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 1.2e-18 97.4 64 76.6
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 2.7e-18 96.3 79 65.8
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.8e-17 93.6 58 81.0
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.8e-17 93.6 102 52.0
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 1.8e-17 93.6 58 81.0
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.0e-17 92.4 125 43.2
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 5.2e-17 92.0 58 79.3
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 5.2e-17 92.0 58 79.3
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 1.2e-16 90.9 74 63.5
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.5e-16 90.5 76 60.5
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 5.7e-16 88.6 115 45.2
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 7.5e-16 88.2 142 45.1
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 1.6e-13 80.5 61 68.9
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 6.1e-10 68.6 61 59.0
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 1.2e-08 64.3 84 51.2
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.7e-07 60.5 89 42.7
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 1.4e-06 57.4 85 42.4


User provided reference genes

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