Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 3.5e-310 1067.4 523 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 1.2e-113 414.5 531 44.1
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 2.1e-108 397.1 526 42.2
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.2e-95 354.8 530 38.9
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.5e-95 354.4 441 40.6
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 6.0e-92 342.4 534 36.0
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 3.0e-91 340.1 538 35.9
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 6.6e-91 339.0 536 36.2
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 1.3e-89 334.7 534 36.1
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 1.6e-89 334.3 536 37.7
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 1.6e-89 334.3 533 34.9
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 3.6e-89 333.2 539 35.8
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 1.1e-88 331.6 538 35.3
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 1.1e-88 331.6 537 35.6
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 2.4e-88 330.5 541 35.3
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 3.1e-88 330.1 530 35.1
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 3.1e-88 330.1 526 35.9
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 9.0e-88 328.6 528 36.0
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 5.8e-87 325.9 535 36.1
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 7.6e-87 325.5 544 34.7
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 9.9e-87 325.1 539 36.4
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.7e-86 324.3 503 36.4
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 1.7e-86 324.3 534 36.7
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 2.2e-86 323.9 534 35.0
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 2.9e-86 323.6 526 37.6
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 2.9e-86 323.6 551 34.1
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 3.8e-86 323.2 540 35.0
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 3.8e-86 323.2 537 33.3
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 4.9e-86 322.8 531 35.4
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 6.4e-86 322.4 542 36.2
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 8.4e-86 322.0 535 35.5
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 8.4e-86 322.0 528 35.4
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 1.9e-85 320.9 541 35.3
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 4.2e-85 319.7 529 34.6
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 4.2e-85 319.7 521 35.7
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 7.1e-85 318.9 527 36.2
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 7.1e-85 318.9 526 34.8
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 9.3e-85 318.5 541 34.4
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.2e-84 318.2 540 34.6
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 2.1e-84 317.4 529 35.2
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 2.7e-84 317.0 534 35.0
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 3.5e-84 316.6 544 34.7
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 3.5e-84 316.6 532 35.0
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 4.6e-84 316.2 543 35.5
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 6.0e-84 315.8 528 35.0
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 6.0e-84 315.8 545 34.1
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 1.8e-83 314.3 523 34.8
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 1.8e-83 314.3 523 34.8
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 1.8e-83 314.3 530 34.3
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 1.8e-83 314.3 533 36.8
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 3.9e-83 313.2 529 36.1
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 5.1e-83 312.8 526 33.8
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 8.7e-83 312.0 564 34.8
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 8.7e-83 312.0 539 34.9
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 1.1e-82 311.6 524 35.3
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 1.5e-82 311.2 521 35.1
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 1.9e-82 310.8 544 34.6
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 3.3e-82 310.1 526 35.4
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 4.3e-82 309.7 521 34.9
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 4.3e-82 309.7 528 33.7
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 4.3e-82 309.7 523 35.2
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 4.3e-82 309.7 527 33.8
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 5.6e-82 309.3 521 35.1
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 7.4e-82 308.9 521 34.9
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 2.1e-81 307.4 526 34.8
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 6.2e-81 305.8 537 33.1
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 8.1e-81 305.4 540 35.2
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 1.1e-80 305.1 460 37.2
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 1.4e-80 304.7 537 34.6
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 3.1e-80 303.5 531 33.1
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 3.1e-80 303.5 539 35.4
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 4.0e-80 303.1 542 33.6
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 4.0e-80 303.1 534 34.8
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 1.5e-79 301.2 535 34.4
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 5.8e-79 299.3 526 34.6
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 1.3e-78 298.1 534 34.6
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 4.9e-78 296.2 508 36.8
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.4e-77 294.7 527 34.2
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 1.4e-77 294.7 530 34.5
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 7.1e-77 292.4 495 36.2
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 2.1e-76 290.8 637 32.2
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 2.3e-75 287.3 579 32.5
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 3.0e-75 287.0 472 34.7
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 8.7e-75 285.4 522 33.9
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.6e-71 273.9 521 32.8
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 3.4e-71 273.5 482 34.4
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 3.2e-69 266.9 373 38.6
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 6.7e-67 259.2 467 34.9
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 2.8e-65 253.8 763 25.6
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 3.4e-63 246.9 439 34.6
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 7.7e-63 245.7 532 30.6
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.1e-58 231.9 530 29.8
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 4.8e-49 199.9 344 36.0
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 1.9e-45 188.0 295 35.3
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 4.2e-45 186.8 268 37.7
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 5.5e-45 186.4 525 28.6
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 3.6e-44 183.7 250 36.4
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 6.7e-43 179.5 264 40.2
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 1.2e-36 158.7 300 34.7
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 1.6e-36 158.3 260 38.5
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 1.8e-35 154.8 260 34.6
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 2.3e-35 154.5 210 37.6
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 2.3e-35 154.5 268 34.0
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 1.5e-34 151.8 429 29.8
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 1.3e-33 148.7 453 25.8
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 5.9e-31 139.8 176 40.3
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.3e-30 138.7 252 34.5
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.5e-26 125.2 201 37.3
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.1e-24 119.0 256 31.2
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 9.1e-24 115.9 457 23.2
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 2.3e-22 111.3 436 26.8
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 1.6e-20 105.1 123 42.3
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 7.5e-18 96.3 122 39.3
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.0e-14 85.9 308 24.4
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 1.4e-11 75.5 353 22.9
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 3.1e-11 74.3 71 43.7
Potri.002G093800 Populus trichocarpa HOM05D008167 ORTHO05D010296 8.9e-11 72.8 403 23.3
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 2.6e-10 71.2 411 22.9
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 5.8e-10 70.1 239 28.0
Aqoxy6G00583 Aquilegia oxysepala HOM05D008167 ORTHO05D010296 4.9e-09 67.0 328 24.1
Ciclev10001481m.g Citrus clementina HOM05D008167 ORTHO05D010296 1.1e-08 65.9 324 24.7
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 4.1e-08 63.9 389 22.9
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 4.1e-08 63.9 105 33.3
Lsat_1_v5_gn_0_9700 Lactuca sativa HOM05D008167 ORTHO05D010296 4.1e-08 63.9 352 22.4
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 5.4e-08 63.5 388 19.6
HanXRQChr04g0111501 Helianthus annuus HOM05D008167 ORTHO05D010296 2.0e-07 61.6 389 22.1
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 2.0e-07 61.6 336 23.5
VMungo0331G0414 Vigna mungo HOM05D008167 ORTHO05D010296 2.7e-07 61.2 404 23.8
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 4.6e-07 60.5 314 22.9
TPR.G32489 Trifolium pratense HOM05D008167 ORTHO05D010296 4.6e-07 60.5 293 23.9
DCAR_008714 Daucus carota HOM05D008167 ORTHO05D010296 1.0e-06 59.3 296 21.3
MBI02_g36661_MAGBIO Magnolia biondii HOM05D008167 ORTHO05D010296 1.0e-06 59.3 380 20.0
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 5.0e-06 57.0 72 38.9
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 5.0e-06 57.0 72 38.9
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 5.0e-06 57.0 72 38.9
Thecc.08G110600 Theobroma cacao HOM05D008167 ORTHO05D010296 5.0e-06 57.0 332 21.7


User provided reference genes

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