Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0048s0104 Marchantia polymorpha HOM05D003656 ORTHO05D004211 2.4e-38 161.8 86 100.0
SEGI_21131 Sequoiadendron giganteum HOM05D003656 ORTHO05D004211 5.0e-20 100.9 82 63.4
Nn2g10711 Nelumbo nucifera HOM05D003656 ORTHO05D004211 4.2e-19 97.8 88 63.6
CiPaw.10G136100 Carya illinoinensis HOM05D003656 ORTHO05D004211 1.2e-18 96.3 77 64.9
Lalb_Chr25g0289191 Lupinus albus HOM05D003656 ORTHO05D004211 2.7e-18 95.1 68 70.6
CiPaw.09G178500 Carya illinoinensis HOM05D003656 ORTHO05D004211 3.6e-18 94.7 89 57.3
TAR623G1327 Trochodendron aralioides HOM05D003656 ORTHO05D004211 4.7e-18 94.4 77 64.9
TAR633G2048 Trochodendron aralioides HOM05D003656 ORTHO05D004211 4.7e-18 94.4 79 62.0
Potri.006G130200 Populus trichocarpa HOM05D003656 ORTHO05D004211 6.1e-18 94.0 88 56.8
arahy.Tifrunner.gnm1.ann1.5V2EV5 Arachis hypogaea HOM05D003656 ORTHO05D004211 1.0e-17 93.2 90 58.9
arahy.Tifrunner.gnm1.ann1.FC0UQU Arachis hypogaea HOM05D003656 ORTHO05D004211 1.0e-17 93.2 90 58.9
MBI02_g25821_MAGBIO Magnolia biondii HOM05D003656 ORTHO05D004211 1.0e-17 93.2 63 76.2
Thecc.05G056100 Theobroma cacao HOM05D003656 ORTHO05D004211 1.4e-17 92.8 82 61.0
Glyma.03G179000 Glycine max HOM05D003656 ORTHO05D004211 1.8e-17 92.4 88 58.0
Gohir.A09G151300 Gossypium hirsutum HOM05D003656 ORTHO05D004211 1.8e-17 92.4 93 61.3
TAR369G0518 Trochodendron aralioides HOM05D003656 ORTHO05D004211 1.8e-17 92.4 77 61.0
Dinv32777 Davidia involucrata HOM05D003656 ORTHO05D004211 2.3e-17 92.0 63 71.4
Glyma.13G138200 Glycine max HOM05D003656 ORTHO05D004211 2.3e-17 92.0 77 62.3
Lalb_Chr02g0156271 Lupinus albus HOM05D003656 ORTHO05D004211 2.3e-17 92.0 91 56.0
AUR62025008 Chenopodium quinoa HOM05D003656 ORTHO05D004211 3.0e-17 91.7 63 71.4
ClCG04G008890 Citrullus lanatus HOM05D003656 ORTHO05D004211 3.0e-17 91.7 73 64.4
Duzib093G1390 Durio zibethinus HOM05D003656 ORTHO05D004211 3.0e-17 91.7 83 59.0
Gohir.D09G146900 Gossypium hirsutum HOM05D003656 ORTHO05D004211 3.0e-17 91.7 93 60.2
Gorai.006G168100 Gossypium raimondii HOM05D003656 ORTHO05D004211 3.0e-17 91.7 93 60.2
HanXRQChr02g0052001 Helianthus annuus HOM05D003656 ORTHO05D004211 3.0e-17 91.7 85 60.0
ClCG10G020440 Citrullus lanatus HOM05D003656 ORTHO05D004211 4.0e-17 91.3 73 64.4
Gorai.009G419300 Gossypium raimondii HOM05D003656 ORTHO05D004211 4.0e-17 91.3 83 59.0
Ah.01g015060 Amaranthus hybridus HOM05D003656 ORTHO05D004211 5.2e-17 90.9 67 65.7
Duzib128G1560 Durio zibethinus HOM05D003656 ORTHO05D004211 5.2e-17 90.9 63 71.4
ECA233G0967 Erigeron canadensis HOM05D003656 ORTHO05D004211 5.2e-17 90.9 80 63.8
Manes.09G076337 Manihot esculenta HOM05D003656 ORTHO05D004211 5.2e-17 90.9 82 58.5
Medtr7g100880 Medicago truncatula HOM05D003656 ORTHO05D004211 5.2e-17 90.9 67 65.7
TPR.G18279 Trifolium pratense HOM05D003656 ORTHO05D004211 5.2e-17 90.9 83 60.2
Gohir.A01G216200 Gossypium hirsutum HOM05D003656 ORTHO05D004211 6.8e-17 90.5 63 71.4
Gohir.A04G075600 Gossypium hirsutum HOM05D003656 ORTHO05D004211 6.8e-17 90.5 63 71.4
Gohir.D01G205000 Gossypium hirsutum HOM05D003656 ORTHO05D004211 6.8e-17 90.5 63 71.4
Gorai.002G249300 Gossypium raimondii HOM05D003656 ORTHO05D004211 6.8e-17 90.5 63 71.4
AagrBONN_evm.TU.Sc2ySwM_362.1629 Anthoceros agrestis HOM05D003656 ORTHO05D004211 8.8e-17 90.1 75 60.0
Cfa017524 Carpinus fangiana HOM05D003656 ORTHO05D004211 8.8e-17 90.1 63 69.8
Haze_20625 Corylus avellana HOM05D003656 ORTHO05D004211 8.8e-17 90.1 63 69.8
Haze_20628 Corylus avellana HOM05D003656 ORTHO05D004211 8.8e-17 90.1 63 69.8
CsaV3_3G035680 Cucumis sativus L. HOM05D000026 ORTHO05D001292 8.8e-17 90.1 78 60.3
Eucgr.A01168 Eucalyptus grandis HOM05D003656 ORTHO05D004211 8.8e-17 90.1 86 60.5
HanXRQChr13g0399601 Helianthus annuus HOM05D003656 ORTHO05D004211 8.8e-17 90.1 82 61.0
Lj1g0024655 Lotus japonicus HOM05D003656 ORTHO05D004211 8.8e-17 90.1 88 55.7
Nitab4.5_0003871g0010 Nicotiana tabacum HOM05D003656 ORTHO05D004211 8.8e-17 90.1 63 73.0
Duzib106G1222 Durio zibethinus HOM05D003656 ORTHO05D004211 1.2e-16 89.7 83 61.4
Hma1.2p1_0614F.1_g189580 Hydrangea macrophylla HOM05D003656 ORTHO05D004211 1.2e-16 89.7 74 62.2
Lsat_1_v5_gn_6_30301 Lactuca sativa HOM05D003656 ORTHO05D004211 1.2e-16 89.7 63 73.0
Medtr7g100905 Medicago truncatula HOM05D003656 ORTHO05D004211 1.2e-16 89.7 66 68.2
Peaxi162Scf00488g00093 Petunia axillaris HOM05D003656 ORTHO05D004211 1.2e-16 89.7 63 69.8
TPR.G18268 Trifolium pratense HOM05D003656 ORTHO05D004211 1.2e-16 89.7 69 63.8
CsaV3_6G039400 Cucumis sativus L. HOM05D003656 ORTHO05D004211 2.0e-16 89.0 89 56.2
Gohir.D04G114700 Gossypium hirsutum HOM05D003656 ORTHO05D004211 2.0e-16 89.0 83 57.8
Hma1.2p1_0111F.1_g054020 Hydrangea macrophylla HOM05D003656 ORTHO05D004211 2.0e-16 89.0 63 68.3
Manes.08G004601 Manihot esculenta HOM05D003656 ORTHO05D004211 2.0e-16 89.0 89 55.1
Nitab4.5_0008568g0020 Nicotiana tabacum HOM05D003656 ORTHO05D004211 2.0e-16 89.0 77 61.0
Lj5g0004266 Lotus japonicus HOM05D003656 ORTHO05D004211 3.4e-16 88.2 63 68.3
Medtr7g100890 Medicago truncatula HOM05D001219 ORTHO05D001017 4.4e-16 87.8 66 66.7
CSS0018024 Camellia sinensis var. sinensis HOM05D003656 ORTHO05D004211 5.7e-16 87.4 76 57.9
MELO3C009327.2 Cucumis melo HOM05D003656 ORTHO05D004211 5.7e-16 87.4 87 57.5
Nn2g13031 Nelumbo nucifera HOM05D003656 ORTHO05D004211 5.7e-16 87.4 88 56.8
Nitab4.5_0006156g0010 Nicotiana tabacum HOM05D003656 ORTHO05D004211 5.7e-16 87.4 63 68.3
Pp3c1_39960 Physcomitrium patens HOM05D003656 ORTHO05D004211 5.7e-16 87.4 82 56.1
Sed0008432 Sechium edule HOM05D003656 ORTHO05D004211 5.7e-16 87.4 62 67.7
Cc06_g03710 Coffea canephora HOM05D003656 ORTHO05D004211 7.5e-16 87.0 87 57.5
Phvul.007G107500 Phaseolus vulgaris HOM05D003656 ORTHO05D004211 7.5e-16 87.0 83 54.2
TWI53G0682 Tripterygium wilfordii HOM05D003656 ORTHO05D004211 7.5e-16 87.0 71 66.2
Actinidia13096 Actinidia chinensis HOM05D003656 ORTHO05D004211 9.8e-16 86.7 63 66.7
CAN.G933.3 Capsicum annuum HOM05D003656 ORTHO05D004211 9.8e-16 86.7 62 67.7
Dinv37267 Davidia involucrata HOM05D003656 ORTHO05D004211 9.8e-16 86.7 77 61.0
Nitab4.5_0000754g0160 Nicotiana tabacum HOM05D003656 ORTHO05D004211 9.8e-16 86.7 63 66.7
Peaxi162Scf00005g00388 Petunia axillaris HOM05D003656 ORTHO05D004211 9.8e-16 86.7 85 56.5
Hund20195 Selenicereus undatus HOM05D003656 ORTHO05D004211 9.8e-16 86.7 63 68.3
Sopen10g035430 Solanum pennellii HOM05D003656 ORTHO05D004211 9.8e-16 86.7 62 67.7
GSVIVG01025648001 Vitis vinifera HOM05D003656 ORTHO05D004211 9.8e-16 86.7 77 61.0
CDE04G2181 Ceratophyllum demersum HOM05D003656 ORTHO05D004211 1.3e-15 86.3 63 63.5
Ciclev10013218m.g Citrus clementina HOM05D003656 ORTHO05D004211 1.7e-15 85.9 77 59.7
Nitab4.5_0003973g0060 Nicotiana tabacum HOM05D003656 ORTHO05D004211 2.2e-15 85.5 63 65.1
Psat3g043880 Pisum sativum HOM05D003656 ORTHO05D004211 2.2e-15 85.5 66 65.2
PGSC0003DMG401017590 Solanum tuberosum HOM05D003656 ORTHO05D004211 2.2e-15 85.5 62 66.1
MSTRG.5727 Avicennia marina HOM05D003656 ORTHO05D004211 2.8e-15 85.1 83 54.2
Oeu014968.1 Olea europaea HOM05D003656 ORTHO05D000397 2.8e-15 85.1 63 68.3
Pp3c14_22690 Physcomitrium patens HOM05D003656 ORTHO05D004211 2.8e-15 85.1 62 67.7
HPP92_018116 Vanilla planifolia HOM05D003656 ORTHO05D004211 2.8e-15 85.1 73 58.9
MD12G1121800 Malus domestica HOM05D003656 ORTHO05D004211 3.7e-15 84.7 73 61.6
Psat0s1011g0080 Pisum sativum HOM05D003656 ORTHO05D004211 3.7e-15 84.7 80 57.5
QL04p031290 Quercus lobata HOM05D003656 ORTHO05D004211 3.7e-15 84.7 65 64.6
QL07p045029 Quercus lobata HOM05D003656 ORTHO05D004211 3.7e-15 84.7 65 64.6
CSS0043834 Camellia sinensis var. sinensis HOM05D003656 ORTHO05D004211 4.8e-15 84.3 63 63.5
Os04g0408900 Oryza sativa ssp. japonica HOM05D003656 ORTHO05D004211 4.8e-15 84.3 64 67.2
Phvul.001G175700 Phaseolus vulgaris HOM05D003656 ORTHO05D004211 4.8e-15 84.3 71 60.6
ATR0716G020 Amborella trichopoda HOM05D003656 ORTHO05D004211 6.3e-15 84.0 70 60.0
Os04g0408700 Oryza sativa ssp. japonica HOM05D003656 ORTHO05D004211 6.3e-15 84.0 64 65.6
Prupe.6G239600 Prunus persica HOM05D003656 ORTHO05D004211 6.3e-15 84.0 71 60.6
Sed0001939 Sechium edule HOM05D003656 ORTHO05D004211 6.3e-15 84.0 78 55.1
AL5G34280 Arabidopsis lyrata HOM05D003656 ORTHO05D004211 1.1e-14 83.2 66 66.7
AT3G53370 Arabidopsis thaliana HOM05D003656 ORTHO05D004211 1.1e-14 83.2 66 66.7
Actinidia05263 Actinidia chinensis HOM05D000190 ORTHO05D000113 1.4e-14 82.8 63 65.1
C05p58400 Brassica napus HOM05D003656 ORTHO05D004211 1.4e-14 82.8 70 58.6
C06p21180 Brassica napus HOM05D003656 ORTHO05D004211 1.4e-14 82.8 69 63.8
BraA07t29841Z Brassica rapa HOM05D003656 ORTHO05D004211 1.4e-14 82.8 69 63.8
Migut.L01670 Erythranthe guttata HOM05D003656 ORTHO05D004211 1.4e-14 82.8 63 65.1
Nitab4.5_0000669g0100 Nicotiana tabacum HOM05D003656 ORTHO05D004211 1.4e-14 82.8 77 59.7
A07p21590 Brassica napus HOM05D003656 ORTHO05D004211 3.1e-14 81.6 66 65.2
BolC6t37304H Brassica oleracea HOM05D003656 ORTHO05D004211 3.1e-14 81.6 66 65.2
SalBow3G0799 Salvia bowleyana HOM05D003656 ORTHO05D004211 3.1e-14 81.6 63 66.7
Oeu060097.1 Olea europaea HOM05D003656 ORTHO05D004211 4.1e-14 81.3 63 63.5
BcaC05g29696 Brassica carinata HOM05D003656 ORTHO05D004211 5.4e-14 80.9 64 62.5
CARHR084160 Cardamine hirsuta HOM05D003656 ORTHO05D004211 7.0e-14 80.5 70 58.6
vmacro08724 Vaccinium macrocarpon HOM05D003656 ORTHO05D004211 7.0e-14 80.5 63 65.1
PSO384G0375 Papaver somniferum HOM05D003656 ORTHO05D004211 9.1e-14 80.1 63 61.9
HPP92_015412 Vanilla planifolia HOM05D003656 ORTHO05D004211 9.1e-14 80.1 63 61.9
Solyc09g007500.3 Solanum lycopersicum HOM05D003656 ORTHO05D004211 1.2e-13 79.7 63 63.5
Sopen09g002370 Solanum pennellii HOM05D003656 ORTHO05D004211 1.2e-13 79.7 63 63.5
Carub.0005s1992 Capsella rubella HOM05D003656 ORTHO05D004211 3.5e-13 78.2 66 63.6
BcaB01g00283 Brassica carinata HOM05D003656 ORTHO05D004211 4.5e-13 77.8 66 62.1
BraA04t16321Z Brassica rapa HOM05D000026 ORTHO05D001292 4.5e-13 77.8 66 62.1
Thhalv10010878m.g Eutrema salsugineum HOM05D003656 ORTHO05D004211 4.5e-13 77.8 66 62.1
BolC4t25493H Brassica oleracea HOM05D000026 ORTHO05D001292 5.9e-13 77.4 78 55.1
CBR_g41122 Chara braunii HOM05D003656 ORTHO05D004211 5.9e-13 77.4 62 64.5
PGSC0003DMG400001772 Solanum tuberosum HOM05D003656 ORTHO05D004211 5.9e-13 77.4 63 60.3
GSVIVG01025155001 Vitis vinifera HOM05D003656 ORTHO05D004211 5.9e-13 77.4 89 52.8
CARHR131630 Cardamine hirsuta HOM05D003656 ORTHO05D004211 7.7e-13 77.0 76 53.9
CARHR163250 Cardamine hirsuta HOM05D003656 ORTHO05D004211 7.7e-13 77.0 72 59.7
BcaC02g09170 Brassica carinata HOM05D000026 ORTHO05D001292 1.0e-12 76.6 66 60.6
A04p06180 Brassica napus HOM05D000026 ORTHO05D001292 1.0e-12 76.6 66 60.6
C04p39250 Brassica napus HOM05D003656 ORTHO05D004211 1.0e-12 76.6 66 60.6
EL10Ac9g22481 Beta vulgaris HOM05D003656 ORTHO05D004211 1.3e-12 76.3 67 59.7
TWI74G0472 Tripterygium wilfordii HOM05D003656 ORTHO05D004211 1.3e-12 76.3 83 51.8
MD04G1102100 Malus domestica HOM05D003656 ORTHO05D004211 2.3e-12 75.5 73 53.4
Sc06g0010000 Simmondsia chinensis HOM05D003656 ORTHO05D004211 2.3e-12 75.5 67 58.2
Lalb_Chr01g0018961 Lupinus albus HOM05D003656 ORTHO05D004211 2.9e-12 75.1 63 60.3
SHI12537 Sapria himalayana HOM05D003656 ORTHO05D004211 5.0e-12 74.3 63 60.3
CDE07G1192 Ceratophyllum demersum HOM05D003656 ORTHO05D004211 8.6e-12 73.6 63 57.1
Sp5g08980 Schrenkiella parvula HOM05D003656 ORTHO05D004211 8.6e-12 73.6 66 60.6
Aqoxy4G03232 Aquilegia oxysepala HOM05D003656 ORTHO05D004211 1.5e-11 72.8 75 49.3
A05p39380 Brassica napus HOM05D003656 ORTHO05D004211 1.9e-11 72.4 70 54.3
BolC5t34493H Brassica oleracea HOM05D003656 ORTHO05D004211 1.9e-11 72.4 70 54.3
BraA03t12757Z Brassica rapa HOM05D003656 ORTHO05D004211 1.9e-11 72.4 70 54.3
BraA05t22719Z Brassica rapa HOM05D003656 ORTHO05D004211 1.9e-11 72.4 70 54.3
Carub.0003s0883 Capsella rubella HOM05D003656 ORTHO05D004211 1.9e-11 72.4 70 54.3
Sp3g08080 Schrenkiella parvula HOM05D003656 ORTHO05D004211 1.9e-11 72.4 70 54.3
Aa31LG5G22410 Aethionema arabicum HOM05D003656 ORTHO05D004211 2.5e-11 72.0 79 50.6
Glyma.19G179700 Glycine max HOM05D003656 ORTHO05D004211 7.2e-11 70.5 88 47.7
Thhalv10021874m.g Eutrema salsugineum HOM05D003656 ORTHO05D004211 9.5e-11 70.1 70 52.9
A03p35840 Brassica napus HOM05D003656 ORTHO05D004211 1.6e-10 69.3 67 53.7
FvH4_6g15550 Fragaria vesca HOM05D003656 ORTHO05D004211 2.1e-10 68.9 63 55.6
FAN02G2121 Fragaria x ananassa HOM05D003656 ORTHO05D004211 2.1e-10 68.9 63 55.6
FAN09G1094 Fragaria x ananassa HOM05D003656 ORTHO05D004211 2.1e-10 68.9 63 55.6
FAN14G0104 Fragaria x ananassa HOM05D003656 ORTHO05D004211 2.1e-10 68.9 63 55.6
unitig_26.g9219 Utricularia gibba HOM05D003656 ORTHO05D004211 2.1e-10 68.9 63 58.7
FAN05G2348 Fragaria x ananassa HOM05D003656 ORTHO05D004211 3.6e-10 68.2 63 55.6
CAN.G1091.10 Capsicum annuum HOM05D003656 ORTHO05D004211 6.1e-10 67.4 63 54.0
Sp4g19440 Schrenkiella parvula HOM05D003656 ORTHO05D004211 6.1e-10 67.4 75 49.3
RcHm_v2.0_Chr3g0469111 Rosa chinensis HOM05D003656 ORTHO05D004211 1.4e-09 66.2 77 49.4
DCAR_017715 Daucus carota HOM05D003656 ORTHO05D004211 2.3e-09 65.5 63 58.7
PGR142G3070 Punica granatum HOM05D003656 ORTHO05D004211 2.3e-09 65.5 86 47.7
Aa31LG3G2170 Aethionema arabicum HOM05D003656 ORTHO05D004211 4.0e-09 64.7 70 48.6
AT3G09735 Arabidopsis thaliana HOM05D003656 ORTHO05D004211 4.0e-09 64.7 70 50.0
AL3G20960 Arabidopsis lyrata HOM05D003656 ORTHO05D004211 8.9e-09 63.5 70 48.6
SalBow5G4464 Salvia bowleyana HOM05D003656 ORTHO05D004211 8.9e-09 63.5 86 45.3
DCAR_014972 Daucus carota HOM05D003656 ORTHO05D004211 2.6e-08 62.0 63 54.0
SalBow5G0952 Salvia bowleyana HOM05D003656 ORTHO05D004211 3.4e-08 61.6 86 44.2
C03p43490 Brassica napus HOM05D003656 ORTHO05D004211 4.4e-08 61.2 70 47.1
Zm00001eb084180 Zea mays HOM05D003656 ORTHO05D004211 4.4e-08 61.2 64 48.4
THA.LOC104823451 Tarenaya hassleriana HOM05D003656 ORTHO05D004211 7.5e-08 60.5 66 51.5
A09p46380 Brassica napus HOM05D003656 ORTHO05D004211 9.8e-08 60.1 66 50.0
C08p28710 Brassica napus HOM05D003656 ORTHO05D004211 9.8e-08 60.1 66 50.0
BraA09t40103Z Brassica rapa HOM05D003656 ORTHO05D004211 9.8e-08 60.1 66 50.0
PGSC0003DMG400020934 Solanum tuberosum HOM05D003656 ORTHO05D004211 1.3e-07 59.7 40 70.0
BcaC01g04245 Brassica carinata HOM05D000958 ORTHO05D000786 2.2e-07 58.9 75 42.7
BolC8t50475H Brassica oleracea HOM05D003656 ORTHO05D004211 2.2e-07 58.9 66 50.0
Glyma.10G050700 Glycine max HOM05D003656 ORTHO05D004211 2.2e-07 58.9 67 47.8
CANSAT54G1105 Cannabis sativa HOM05D003656 ORTHO05D004211 3.7e-07 58.2 53 54.7
HPP92_018154 Vanilla planifolia HOM05D003656 ORTHO05D004211 3.7e-07 58.2 49 59.2
A01p42160 Brassica napus HOM05D003656 ORTHO05D004211 4.9e-07 57.8 70 45.7
THA.LOC104806498 Tarenaya hassleriana HOM05D003656 ORTHO05D004211 8.3e-07 57.0 66 48.5
Atru.chr8.1893 Acer truncatum HOM05D003656 ORTHO05D004211 1.8e-06 55.8 50 56.0
Lalb_Chr21g0314731 Lupinus albus HOM05D003656 ORTHO05D004211 2.4e-06 55.5 48 56.2
BolC1t05435H Brassica oleracea HOM05D003656 ORTHO05D004211 4.1e-06 54.7 67 44.8
BraA01t04284Z Brassica rapa HOM05D003656 ORTHO05D004211 4.1e-06 54.7 67 44.8
BcaB02g07791 Brassica carinata HOM05D003656 ORTHO05D004211 5.4e-06 54.3 66 50.0
Aa31LG10G8550 Aethionema arabicum HOM05D003656 ORTHO05D004211 7.0e-06 53.9 66 43.9
Migut.J00425 Erythranthe guttata HOM05D003656 ORTHO05D004211 9.2e-06 53.5 63 49.2


User provided reference genes

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